Hb_000359_120

Information

Type -
Description -
Location Contig359: 139718-149038
Sequence    

Annotation

kegg
ID rcu:RCOM_1192130
description hypothetical protein
nr
ID XP_002520368.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2Z9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1192130 PE=4 SV=1
Gene Ontology
ID GO:0009505
description pleckstrin homology domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005333_160 0.0768789679 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
3 Hb_000270_460 0.0798955544 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
4 Hb_171900_070 0.0802759851 - - -
5 Hb_001953_150 0.0844696866 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
6 Hb_006658_040 0.0928179055 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
7 Hb_000086_560 0.0955638552 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
8 Hb_002374_260 0.0969582665 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
9 Hb_001799_050 0.0984113079 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
10 Hb_005289_040 0.0987080064 - - poly(A) polymerase, putative [Ricinus communis]
11 Hb_005332_020 0.0991969248 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_000160_350 0.1002221153 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
13 Hb_011689_060 0.1008156814 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
14 Hb_032202_120 0.1009476981 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
15 Hb_002918_060 0.101232794 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
16 Hb_000922_140 0.1021481875 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
17 Hb_002157_050 0.1030070442 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
18 Hb_001486_160 0.1031615854 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_002045_150 0.104963373 - - histone acetyltransferase gcn5, putative [Ricinus communis]
20 Hb_000917_320 0.1070611774 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_120 Hb_000359_120 Hb_005333_160 Hb_005333_160 Hb_000359_120--Hb_005333_160 Hb_000270_460 Hb_000270_460 Hb_000359_120--Hb_000270_460 Hb_171900_070 Hb_171900_070 Hb_000359_120--Hb_171900_070 Hb_001953_150 Hb_001953_150 Hb_000359_120--Hb_001953_150 Hb_006658_040 Hb_006658_040 Hb_000359_120--Hb_006658_040 Hb_000086_560 Hb_000086_560 Hb_000359_120--Hb_000086_560 Hb_005333_160--Hb_171900_070 Hb_003943_020 Hb_003943_020 Hb_005333_160--Hb_003943_020 Hb_005333_160--Hb_000086_560 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080 Hb_011689_060 Hb_011689_060 Hb_005333_160--Hb_011689_060 Hb_007982_070 Hb_007982_070 Hb_000270_460--Hb_007982_070 Hb_001102_080 Hb_001102_080 Hb_000270_460--Hb_001102_080 Hb_000300_360 Hb_000300_360 Hb_000270_460--Hb_000300_360 Hb_001143_180 Hb_001143_180 Hb_000270_460--Hb_001143_180 Hb_002045_150 Hb_002045_150 Hb_000270_460--Hb_002045_150 Hb_007558_120 Hb_007558_120 Hb_000270_460--Hb_007558_120 Hb_005289_040 Hb_005289_040 Hb_171900_070--Hb_005289_040 Hb_171900_070--Hb_000086_560 Hb_032202_120 Hb_032202_120 Hb_171900_070--Hb_032202_120 Hb_171900_070--Hb_011689_060 Hb_000922_140 Hb_000922_140 Hb_001953_150--Hb_000922_140 Hb_005332_020 Hb_005332_020 Hb_001953_150--Hb_005332_020 Hb_080147_040 Hb_080147_040 Hb_001953_150--Hb_080147_040 Hb_001799_050 Hb_001799_050 Hb_001953_150--Hb_001799_050 Hb_001143_250 Hb_001143_250 Hb_001953_150--Hb_001143_250 Hb_001953_150--Hb_000270_460 Hb_001307_080 Hb_001307_080 Hb_006658_040--Hb_001307_080 Hb_006658_040--Hb_000922_140 Hb_000160_350 Hb_000160_350 Hb_006658_040--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_006658_040--Hb_002157_260 Hb_006658_040--Hb_002045_150 Hb_005965_030 Hb_005965_030 Hb_006658_040--Hb_005965_030 Hb_011930_080 Hb_011930_080 Hb_000086_560--Hb_011930_080 Hb_001427_190 Hb_001427_190 Hb_000086_560--Hb_001427_190 Hb_005053_010 Hb_005053_010 Hb_000086_560--Hb_005053_010 Hb_002374_260 Hb_002374_260 Hb_000086_560--Hb_002374_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.45415 4.86923 6.56287 2.4679 5.77398 5.31581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4774 2.95653 1.4974 6.48282 3.15045

CAGE analysis