Hb_000359_140

Information

Type -
Description -
Location Contig359: 159704-168796
Sequence    

Annotation

kegg
ID tcc:TCM_001939
description TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein isoform 1
nr
ID XP_012080928.1
description PREDICTED: transmembrane protein 56-like [Jatropha curcas]
swissprot
ID Q6PGS5
description Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
trembl
ID A0A067K312
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16957 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 56-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37049: 159922-168792 , PASA_asmbl_37050: 159954-168643 , PASA_asmbl_37051: 164266-164630
cDNA
(Sanger)
(ID:Location)		 042_N18.ab1: 165844-168792

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_140 0.0 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
2 Hb_027760_070 0.1058291209 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
3 Hb_001135_140 0.1208409763 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
4 Hb_074715_010 0.1213054054 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
5 Hb_000260_600 0.1234365027 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000457_140 0.1275087586 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
7 Hb_000140_350 0.1289167927 - - conserved hypothetical protein [Ricinus communis]
8 Hb_026228_020 0.1316326312 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
9 Hb_002662_020 0.1320148646 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
10 Hb_131035_010 0.1323453679 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_146081_010 0.1372255372 - - PREDICTED: protein SCAI [Jatropha curcas]
12 Hb_001217_040 0.137295703 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
13 Hb_000836_280 0.1381217443 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
14 Hb_005269_040 0.1388728483 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
15 Hb_000245_080 0.1401051777 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
16 Hb_002110_040 0.1402182843 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
17 Hb_001018_130 0.1405923814 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
18 Hb_075764_010 0.1411161018 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
19 Hb_012322_020 0.143561875 - - -
20 Hb_001258_110 0.1448439938 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000359_140 Hb_000359_140 Hb_027760_070 Hb_027760_070 Hb_000359_140--Hb_027760_070 Hb_001135_140 Hb_001135_140 Hb_000359_140--Hb_001135_140 Hb_074715_010 Hb_074715_010 Hb_000359_140--Hb_074715_010 Hb_000260_600 Hb_000260_600 Hb_000359_140--Hb_000260_600 Hb_000457_140 Hb_000457_140 Hb_000359_140--Hb_000457_140 Hb_000140_350 Hb_000140_350 Hb_000359_140--Hb_000140_350 Hb_030736_070 Hb_030736_070 Hb_027760_070--Hb_030736_070 Hb_000139_130 Hb_000139_130 Hb_027760_070--Hb_000139_130 Hb_027760_070--Hb_000457_140 Hb_146081_010 Hb_146081_010 Hb_027760_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_027760_070--Hb_008143_070 Hb_005023_030 Hb_005023_030 Hb_001135_140--Hb_005023_030 Hb_002110_040 Hb_002110_040 Hb_001135_140--Hb_002110_040 Hb_115107_010 Hb_115107_010 Hb_001135_140--Hb_115107_010 Hb_002067_120 Hb_002067_120 Hb_001135_140--Hb_002067_120 Hb_001018_130 Hb_001018_130 Hb_001135_140--Hb_001018_130 Hb_005269_040 Hb_005269_040 Hb_074715_010--Hb_005269_040 Hb_005048_130 Hb_005048_130 Hb_074715_010--Hb_005048_130 Hb_002662_020 Hb_002662_020 Hb_074715_010--Hb_002662_020 Hb_001377_270 Hb_001377_270 Hb_074715_010--Hb_001377_270 Hb_004143_040 Hb_004143_040 Hb_074715_010--Hb_004143_040 Hb_028962_020 Hb_028962_020 Hb_074715_010--Hb_028962_020 Hb_000991_040 Hb_000991_040 Hb_000260_600--Hb_000991_040 Hb_000260_600--Hb_000140_350 Hb_000890_230 Hb_000890_230 Hb_000260_600--Hb_000890_230 Hb_000322_070 Hb_000322_070 Hb_000260_600--Hb_000322_070 Hb_000009_400 Hb_000009_400 Hb_000260_600--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_000260_600--Hb_003617_020 Hb_000457_140--Hb_030736_070 Hb_001205_110 Hb_001205_110 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_000457_140--Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_000457_140--Hb_001055_030 Hb_000146_040 Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000836_280 Hb_000836_280 Hb_000140_350--Hb_000836_280 Hb_000208_280 Hb_000208_280 Hb_000140_350--Hb_000208_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97005 11.556 3.41846 24.1365 9.78642 14.8917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.29881 7.99574 4.79022 8.15047 4.1598

CAGE analysis