Hb_000359_150

Information

Type -
Description -
Location Contig359: 170336-173450
Sequence    

Annotation

kegg
ID tcc:TCM_035331
description Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein, putative isoform 2
nr
ID XP_012075509.1
description PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
swissprot
ID Q54FR4
description PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1
trembl
ID A0A067KJ46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11209 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein mpv17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37052: 170338-173495
cDNA
(Sanger)
(ID:Location)		 042_L23.ab1: 170338-173299

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_150 0.0 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
2 Hb_000261_160 0.0810934182 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
3 Hb_002171_060 0.0857477542 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001016_150 0.0886668764 - - Rop1 [Hevea brasiliensis]
5 Hb_000599_260 0.0925290887 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
6 Hb_000690_190 0.0930540716 - - 40S ribosomal protein S7, putative [Ricinus communis]
7 Hb_004041_020 0.0969641658 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
8 Hb_000562_030 0.0980898934 - - conserved hypothetical protein [Ricinus communis]
9 Hb_161574_020 0.1017086184 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
10 Hb_002946_190 0.1019614259 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
11 Hb_007878_010 0.102243328 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
12 Hb_006326_040 0.1023183214 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001931_010 0.102419328 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
14 Hb_008071_020 0.1034741174 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
15 Hb_005000_330 0.103856185 - - conserved hypothetical protein [Ricinus communis]
16 Hb_171900_060 0.1051078989 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
17 Hb_015299_030 0.1051942656 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
18 Hb_002105_100 0.1058699888 - - protein with unknown function [Ricinus communis]
19 Hb_011330_020 0.1073605318 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
20 Hb_028396_010 0.1077424264 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_000359_150 Hb_000359_150 Hb_000261_160 Hb_000261_160 Hb_000359_150--Hb_000261_160 Hb_002171_060 Hb_002171_060 Hb_000359_150--Hb_002171_060 Hb_001016_150 Hb_001016_150 Hb_000359_150--Hb_001016_150 Hb_000599_260 Hb_000599_260 Hb_000359_150--Hb_000599_260 Hb_000690_190 Hb_000690_190 Hb_000359_150--Hb_000690_190 Hb_004041_020 Hb_004041_020 Hb_000359_150--Hb_004041_020 Hb_000261_160--Hb_002171_060 Hb_008071_020 Hb_008071_020 Hb_000261_160--Hb_008071_020 Hb_001195_480 Hb_001195_480 Hb_000261_160--Hb_001195_480 Hb_003992_270 Hb_003992_270 Hb_000261_160--Hb_003992_270 Hb_001931_010 Hb_001931_010 Hb_000261_160--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_000261_160--Hb_001279_080 Hb_161574_020 Hb_161574_020 Hb_002171_060--Hb_161574_020 Hb_007878_010 Hb_007878_010 Hb_002171_060--Hb_007878_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001863_430 Hb_001863_430 Hb_001016_150--Hb_001863_430 Hb_002078_140 Hb_002078_140 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_000599_260--Hb_001931_010 Hb_002307_180 Hb_002307_180 Hb_000599_260--Hb_002307_180 Hb_000599_260--Hb_002171_060 Hb_000505_130 Hb_000505_130 Hb_000599_260--Hb_000505_130 Hb_001472_100 Hb_001472_100 Hb_000599_260--Hb_001472_100 Hb_012565_070 Hb_012565_070 Hb_000599_260--Hb_012565_070 Hb_002946_190 Hb_002946_190 Hb_000690_190--Hb_002946_190 Hb_000690_190--Hb_002307_180 Hb_000690_190--Hb_000599_260 Hb_000690_190--Hb_007878_010 Hb_000690_190--Hb_161574_020 Hb_000690_190--Hb_002171_060 Hb_004041_020--Hb_002946_190 Hb_000413_240 Hb_000413_240 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_000429_040 Hb_000429_040 Hb_004041_020--Hb_000429_040 Hb_004041_020--Hb_000599_260 Hb_004041_020--Hb_012565_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73842 3.05171 11.0197 11.2403 3.65224 7.37868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.46219 15.6066 5.04035 4.64806 4.13776

CAGE analysis