Hb_000359_170

Information

Type -
Description -
Location Contig359: 184231-192955
Sequence    

Annotation

kegg
ID cit:102626148
description shaggy-related protein kinase zeta-like
nr
ID KDO63406.1
description hypothetical protein CISIN_1g014750mg [Citrus sinensis]
swissprot
ID Q39010
description Shaggy-related protein kinase zeta OS=Arabidopsis thaliana GN=ASK6 PE=2 SV=2
trembl
ID A0A067FJM8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014750mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description shaggy-related protein kinase zeta isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37055: 184251-192909 , PASA_asmbl_37056: 185560-192906
cDNA
(Sanger)
(ID:Location)		 019_J04.ab1: 184251-188824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_170 0.0 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
2 Hb_008725_250 0.0704605521 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_022137_060 0.079220613 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
4 Hb_002400_220 0.0800330507 - - Vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_005754_020 0.0812940942 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
6 Hb_033491_010 0.0822629039 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
7 Hb_005306_110 0.0865885509 - - casein kinase, putative [Ricinus communis]
8 Hb_000120_800 0.0879389446 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
9 Hb_004310_060 0.0885675977 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_002215_050 0.091104566 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
11 Hb_007908_020 0.0914037172 - - zinc finger family protein [Populus trichocarpa]
12 Hb_000732_260 0.0915799616 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
13 Hb_002249_140 0.0924678542 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
14 Hb_000028_470 0.0948145711 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
15 Hb_003352_050 0.0954218029 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
16 Hb_001840_080 0.0959403544 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
17 Hb_002044_090 0.0973377356 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
18 Hb_000784_090 0.0975869666 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
19 Hb_076787_010 0.0977476137 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
20 Hb_005914_230 0.0981334454 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_170 Hb_000359_170 Hb_008725_250 Hb_008725_250 Hb_000359_170--Hb_008725_250 Hb_022137_060 Hb_022137_060 Hb_000359_170--Hb_022137_060 Hb_002400_220 Hb_002400_220 Hb_000359_170--Hb_002400_220 Hb_005754_020 Hb_005754_020 Hb_000359_170--Hb_005754_020 Hb_033491_010 Hb_033491_010 Hb_000359_170--Hb_033491_010 Hb_005306_110 Hb_005306_110 Hb_000359_170--Hb_005306_110 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_006663_100 Hb_006663_100 Hb_022137_060--Hb_006663_100 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_000120_800 Hb_000120_800 Hb_022137_060--Hb_000120_800 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_012760_170 Hb_012760_170 Hb_022137_060--Hb_012760_170 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_007441_340 Hb_007441_340 Hb_002400_220--Hb_007441_340 Hb_002400_220--Hb_033491_010 Hb_001269_150 Hb_001269_150 Hb_002400_220--Hb_001269_150 Hb_002044_090 Hb_002044_090 Hb_005754_020--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_005754_020--Hb_000062_230 Hb_002377_040 Hb_002377_040 Hb_005754_020--Hb_002377_040 Hb_000028_470 Hb_000028_470 Hb_005754_020--Hb_000028_470 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_001584_330 Hb_001584_330 Hb_005306_110--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_005306_110--Hb_001623_420 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
335.483 89.6521 65.2071 74.4669 258.834 311.532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
301.157 121.915 187.465 54.5702 31.3402

CAGE analysis