Hb_000359_190

Information

Type -
Description -
Location Contig359: 207365-220017
Sequence    

Annotation

kegg
ID rcu:RCOM_0695930
description vacuolar protein sorting vps16, putative
nr
ID XP_009790374.1
description PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
swissprot
ID Q93VQ0
description Protein VACUOLELESS1 OS=Arabidopsis thaliana GN=VCL1 PE=1 SV=1
trembl
ID A0A0D6R9L4
description Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1
Gene Ontology
ID GO:0005737
description protein vacuoleless1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37058: 207317-220016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_190 0.0 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
2 Hb_000358_100 0.0616552371 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
3 Hb_044486_020 0.0678216072 - - CASTOR protein [Glycine max]
4 Hb_000020_160 0.0759336136 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
5 Hb_183086_030 0.0801114112 - - GTPase-activating protein GYP7 [Gossypium arboreum]
6 Hb_021977_010 0.0837824823 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
7 Hb_000103_290 0.0839071593 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
8 Hb_000954_010 0.0848658214 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
9 Hb_002007_260 0.0848819128 - - beta-mannosidase, putative [Ricinus communis]
10 Hb_000085_260 0.0868685543 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
11 Hb_000284_230 0.0878340553 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
12 Hb_000054_040 0.0881531668 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
13 Hb_033642_060 0.0888384901 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
14 Hb_002045_170 0.0894516081 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
15 Hb_001246_130 0.0907979108 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
16 Hb_001085_080 0.0916231803 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
17 Hb_010315_020 0.0917085043 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
18 Hb_022250_010 0.0917778327 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
19 Hb_001103_090 0.0921524289 - - PREDICTED: patellin-3 [Populus euphratica]
20 Hb_005062_110 0.0935544832 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_190 Hb_000359_190 Hb_000358_100 Hb_000358_100 Hb_000359_190--Hb_000358_100 Hb_044486_020 Hb_044486_020 Hb_000359_190--Hb_044486_020 Hb_000020_160 Hb_000020_160 Hb_000359_190--Hb_000020_160 Hb_183086_030 Hb_183086_030 Hb_000359_190--Hb_183086_030 Hb_021977_010 Hb_021977_010 Hb_000359_190--Hb_021977_010 Hb_000103_290 Hb_000103_290 Hb_000359_190--Hb_000103_290 Hb_000358_100--Hb_000020_160 Hb_000284_230 Hb_000284_230 Hb_000358_100--Hb_000284_230 Hb_000066_150 Hb_000066_150 Hb_000358_100--Hb_000066_150 Hb_007245_020 Hb_007245_020 Hb_000358_100--Hb_007245_020 Hb_000172_340 Hb_000172_340 Hb_000358_100--Hb_000172_340 Hb_044486_020--Hb_000020_160 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020 Hb_000358_220 Hb_000358_220 Hb_000020_160--Hb_000358_220 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000020_160--Hb_000172_340 Hb_170077_010 Hb_170077_010 Hb_000020_160--Hb_170077_010 Hb_033642_060 Hb_033642_060 Hb_183086_030--Hb_033642_060 Hb_022250_010 Hb_022250_010 Hb_183086_030--Hb_022250_010 Hb_001801_020 Hb_001801_020 Hb_183086_030--Hb_001801_020 Hb_000922_060 Hb_000922_060 Hb_183086_030--Hb_000922_060 Hb_001246_130 Hb_001246_130 Hb_183086_030--Hb_001246_130 Hb_001414_010 Hb_001414_010 Hb_021977_010--Hb_001414_010 Hb_003661_010 Hb_003661_010 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_009476_120 Hb_009476_120 Hb_021977_010--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_021977_010--Hb_001998_220 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_016172_030 Hb_016172_030 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_060980_010 Hb_060980_010 Hb_000103_290--Hb_060980_010 Hb_027506_010 Hb_027506_010 Hb_000103_290--Hb_027506_010 Hb_000103_290--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.32233 7.73602 6.95584 12.0567 5.99011 4.68
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85452 2.81843 3.02573 6.65405 8.9657

CAGE analysis