Hb_000359_210

Information

Type -
Description -
Location Contig359: 224841-229106
Sequence    

Annotation

kegg
ID rcu:RCOM_0696570
description hypothetical protein
nr
ID XP_002526650.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9UP83
description Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=3
trembl
ID B9SKY1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0696570 PE=4 SV=1
Gene Ontology
ID GO:0017119
description conserved oligomeric golgi complex subunit 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37061: 224872-226839 , PASA_asmbl_37062: 228057-228793
cDNA
(Sanger)
(ID:Location)		 026_M22.ab1: 224872-225387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002897_090 0.0606076846 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002027_080 0.0630311484 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
4 Hb_001195_400 0.0656201612 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
5 Hb_002874_110 0.066862158 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
6 Hb_004679_030 0.0669182444 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
7 Hb_003206_110 0.0695128159 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
8 Hb_003544_160 0.0705103177 - - -
9 Hb_005650_010 0.0745254397 - - ATP binding protein, putative [Ricinus communis]
10 Hb_003581_200 0.0758597511 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
11 Hb_000684_210 0.0764505549 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
12 Hb_005725_130 0.0773347753 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
13 Hb_009569_040 0.0778124548 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
14 Hb_170138_010 0.0782359998 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012330_010 0.0783724465 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
16 Hb_001975_150 0.078708096 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
17 Hb_001789_110 0.0791468353 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_011228_010 0.0799188882 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000046_540 0.0807086314 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
20 Hb_073171_070 0.0814089252 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000359_210 Hb_000359_210 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_001195_400 Hb_001195_400 Hb_000359_210--Hb_001195_400 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_004679_030 Hb_004679_030 Hb_000359_210--Hb_004679_030 Hb_003206_110 Hb_003206_110 Hb_000359_210--Hb_003206_110 Hb_002897_090--Hb_002027_080 Hb_002883_030 Hb_002883_030 Hb_002897_090--Hb_002883_030 Hb_002897_090--Hb_004679_030 Hb_000441_090 Hb_000441_090 Hb_002897_090--Hb_000441_090 Hb_122968_010 Hb_122968_010 Hb_002897_090--Hb_122968_010 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_001195_400--Hb_003206_110 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010 Hb_003206_110--Hb_170138_010 Hb_004046_030 Hb_004046_030 Hb_003206_110--Hb_004046_030 Hb_003206_110--Hb_000185_220 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.38936 5.38222 7.41964 11.4792 5.66223 7.50184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.50155 5.38459 6.785 9.60131 15.9013

CAGE analysis