Hb_000359_220

Information

Type -
Description -
Location Contig359: 229296-230900
Sequence    

Annotation

kegg
ID rcu:RCOM_0235550
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012087447.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJG6
description Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1
trembl
ID B9T751
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0235550 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37063: 230125-230401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_220 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
2 Hb_000320_360 0.1070487238 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
3 Hb_001411_050 0.107245811 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
4 Hb_013399_090 0.1122054192 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
5 Hb_000906_070 0.116032722 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
6 Hb_006846_080 0.117404446 - - calnexin, putative [Ricinus communis]
7 Hb_001411_030 0.1182119185 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
8 Hb_002809_160 0.1301970538 - - PREDICTED: protein FAM63A [Jatropha curcas]
9 Hb_029552_020 0.130678927 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004225_040 0.1338815808 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
11 Hb_015778_060 0.1352532833 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
12 Hb_002942_130 0.1360965458 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
13 Hb_001998_220 0.1372367355 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
14 Hb_000964_170 0.1379861266 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
15 Hb_004875_010 0.1384357128 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
16 Hb_006916_030 0.1387516618 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
17 Hb_001109_160 0.139583304 - - DNA binding protein, putative [Ricinus communis]
18 Hb_001140_180 0.1431493094 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
19 Hb_007576_180 0.1445693896 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
20 Hb_000025_500 0.1462982666 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000359_220 Hb_000359_220 Hb_000320_360 Hb_000320_360 Hb_000359_220--Hb_000320_360 Hb_001411_050 Hb_001411_050 Hb_000359_220--Hb_001411_050 Hb_013399_090 Hb_013399_090 Hb_000359_220--Hb_013399_090 Hb_000906_070 Hb_000906_070 Hb_000359_220--Hb_000906_070 Hb_006846_080 Hb_006846_080 Hb_000359_220--Hb_006846_080 Hb_001411_030 Hb_001411_030 Hb_000359_220--Hb_001411_030 Hb_000320_360--Hb_013399_090 Hb_015778_060 Hb_015778_060 Hb_000320_360--Hb_015778_060 Hb_001408_120 Hb_001408_120 Hb_000320_360--Hb_001408_120 Hb_002942_130 Hb_002942_130 Hb_000320_360--Hb_002942_130 Hb_000008_410 Hb_000008_410 Hb_000320_360--Hb_000008_410 Hb_001579_200 Hb_001579_200 Hb_001411_050--Hb_001579_200 Hb_006916_030 Hb_006916_030 Hb_001411_050--Hb_006916_030 Hb_001411_050--Hb_006846_080 Hb_004225_040 Hb_004225_040 Hb_001411_050--Hb_004225_040 Hb_001140_180 Hb_001140_180 Hb_001411_050--Hb_001140_180 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_000340_360 Hb_000340_360 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_004346_040 Hb_004346_040 Hb_000906_070--Hb_004346_040 Hb_001109_160 Hb_001109_160 Hb_000906_070--Hb_001109_160 Hb_000906_070--Hb_006916_030 Hb_029552_020 Hb_029552_020 Hb_000906_070--Hb_029552_020 Hb_000906_070--Hb_013399_090 Hb_005914_040 Hb_005914_040 Hb_006846_080--Hb_005914_040 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_010757_030 Hb_010757_030 Hb_006846_080--Hb_010757_030 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_006846_080--Hb_004225_040 Hb_001411_030--Hb_004225_040 Hb_119600_050 Hb_119600_050 Hb_001411_030--Hb_119600_050 Hb_022250_100 Hb_022250_100 Hb_001411_030--Hb_022250_100 Hb_005211_020 Hb_005211_020 Hb_001411_030--Hb_005211_020 Hb_003470_070 Hb_003470_070 Hb_001411_030--Hb_003470_070 Hb_001411_030--Hb_001579_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15156 1.20079 0.998082 0.875558 0.721253 0.634644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1734 0.0682116 0.214125 0.870502 2.19405

CAGE analysis