Hb_000359_230

Information

Type -
Description -
Location Contig359: 231121-231924
Sequence    

Annotation

kegg
ID pmum:103328835
description putative DNA-binding protein ESCAROLA
nr
ID XP_008229461.1
description PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
swissprot
ID Q9SJG4
description AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana GN=AHL16 PE=1 SV=1
trembl
ID A0A067LQP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10400 PE=4 SV=1
Gene Ontology
ID GO:0031490
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_230 0.0 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
2 Hb_002548_030 0.0024119791 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
3 Hb_110356_010 0.0166666012 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
4 Hb_099188_010 0.0470029218 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_034581_010 0.0487005408 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
6 Hb_001677_140 0.0602238355 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
7 Hb_128851_020 0.0715204897 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_157957_010 0.0766843664 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
9 Hb_003207_230 0.0817416903 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
10 Hb_036754_040 0.0824001145 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_047955_010 0.084432016 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
12 Hb_010477_020 0.0883347944 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
13 Hb_002252_030 0.0887150489 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
14 Hb_010136_020 0.0898068314 - - stress-induced receptor-like kinase [Medicago truncatula]
15 Hb_124953_010 0.0926852593 - - hypothetical protein RCOM_1314600 [Ricinus communis]
16 Hb_002006_110 0.0928415407 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
17 Hb_001511_200 0.1026635509 - - Embryonic abundant protein, putative [Ricinus communis]
18 Hb_000032_150 0.1027180307 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
19 Hb_002542_030 0.1138143623 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
20 Hb_027506_060 0.1252094544 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000359_230 Hb_000359_230 Hb_002548_030 Hb_002548_030 Hb_000359_230--Hb_002548_030 Hb_110356_010 Hb_110356_010 Hb_000359_230--Hb_110356_010 Hb_099188_010 Hb_099188_010 Hb_000359_230--Hb_099188_010 Hb_034581_010 Hb_034581_010 Hb_000359_230--Hb_034581_010 Hb_001677_140 Hb_001677_140 Hb_000359_230--Hb_001677_140 Hb_128851_020 Hb_128851_020 Hb_000359_230--Hb_128851_020 Hb_002548_030--Hb_110356_010 Hb_002548_030--Hb_099188_010 Hb_002548_030--Hb_034581_010 Hb_002548_030--Hb_001677_140 Hb_002548_030--Hb_128851_020 Hb_110356_010--Hb_034581_010 Hb_110356_010--Hb_001677_140 Hb_110356_010--Hb_099188_010 Hb_110356_010--Hb_128851_020 Hb_099188_010--Hb_128851_020 Hb_099188_010--Hb_001677_140 Hb_099188_010--Hb_034581_010 Hb_034581_010--Hb_001677_140 Hb_036754_040 Hb_036754_040 Hb_034581_010--Hb_036754_040 Hb_010136_020 Hb_010136_020 Hb_034581_010--Hb_010136_020 Hb_001677_140--Hb_128851_020 Hb_001677_140--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_001677_140--Hb_002006_110 Hb_001677_140--Hb_036754_040 Hb_001511_200 Hb_001511_200 Hb_128851_020--Hb_001511_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.190966 0.0890691 0.0490615 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis