Hb_000362_090

Information

Type -
Description -
Location Contig362: 91038-97650
Sequence    

Annotation

kegg
ID cic:CICLE_v10007809mg
description hypothetical protein
nr
ID XP_012074212.1
description PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
swissprot
ID Q99385
description Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1
trembl
ID A0A067KJ86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09836 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar calcium ion transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37203: 91202-117388 , PASA_asmbl_37208: 94167-94325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_090 0.0 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
2 Hb_009193_110 0.0897911453 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
3 Hb_004800_240 0.1138055609 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
4 Hb_001699_150 0.118837657 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
5 Hb_089100_040 0.121250155 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
6 Hb_004162_120 0.1232553019 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
7 Hb_148682_010 0.1276017674 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
8 Hb_004126_080 0.1285210036 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
9 Hb_000216_020 0.1297185268 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
10 Hb_001369_770 0.1297658721 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
11 Hb_000120_520 0.1370355809 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
12 Hb_002016_060 0.1374154451 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_002942_110 0.1386729174 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
14 Hb_000917_100 0.142500416 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
15 Hb_002685_030 0.1434891692 - - PREDICTED: protein SMG7L [Jatropha curcas]
16 Hb_020178_050 0.1437916972 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
17 Hb_010398_010 0.145241649 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
18 Hb_002005_120 0.1452800901 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
19 Hb_048848_010 0.1477870421 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
20 Hb_000751_140 0.1478218967 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000362_090 Hb_000362_090 Hb_009193_110 Hb_009193_110 Hb_000362_090--Hb_009193_110 Hb_004800_240 Hb_004800_240 Hb_000362_090--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_000362_090--Hb_001699_150 Hb_089100_040 Hb_089100_040 Hb_000362_090--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000362_090--Hb_004162_120 Hb_148682_010 Hb_148682_010 Hb_000362_090--Hb_148682_010 Hb_009193_110--Hb_004800_240 Hb_012038_010 Hb_012038_010 Hb_009193_110--Hb_012038_010 Hb_000917_100 Hb_000917_100 Hb_009193_110--Hb_000917_100 Hb_002942_110 Hb_002942_110 Hb_009193_110--Hb_002942_110 Hb_008406_040 Hb_008406_040 Hb_009193_110--Hb_008406_040 Hb_004800_240--Hb_148682_010 Hb_004800_240--Hb_012038_010 Hb_001646_010 Hb_001646_010 Hb_004800_240--Hb_001646_010 Hb_000334_130 Hb_000334_130 Hb_004800_240--Hb_000334_130 Hb_004126_080 Hb_004126_080 Hb_004800_240--Hb_004126_080 Hb_001799_190 Hb_001799_190 Hb_001699_150--Hb_001799_190 Hb_001699_150--Hb_004126_080 Hb_001699_150--Hb_148682_010 Hb_001675_010 Hb_001675_010 Hb_001699_150--Hb_001675_010 Hb_002016_060 Hb_002016_060 Hb_001699_150--Hb_002016_060 Hb_003544_070 Hb_003544_070 Hb_001699_150--Hb_003544_070 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000866_370 Hb_000866_370 Hb_089100_040--Hb_000866_370 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030 Hb_004162_120--Hb_065500_030 Hb_000751_140 Hb_000751_140 Hb_004162_120--Hb_000751_140 Hb_004162_120--Hb_000917_100 Hb_000197_030 Hb_000197_030 Hb_004162_120--Hb_000197_030 Hb_080451_010 Hb_080451_010 Hb_004162_120--Hb_080451_010 Hb_002005_120 Hb_002005_120 Hb_004162_120--Hb_002005_120 Hb_148682_010--Hb_004126_080 Hb_148682_010--Hb_001646_010 Hb_001195_020 Hb_001195_020 Hb_148682_010--Hb_001195_020 Hb_044486_040 Hb_044486_040 Hb_148682_010--Hb_044486_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.99778 36.419 12.2697 17.7529 13.7774 9.55917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3823 1.16308 1.40904 21.2054 6.98279

CAGE analysis