Hb_000362_100

Information

Type -
Description -
Location Contig362: 104136-104691
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37203: 91202-117388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_100 0.0 - - -
2 Hb_007632_140 0.027966725 - - -
3 Hb_002121_070 0.0291803516 - - conserved hypothetical protein [Ricinus communis]
4 Hb_019135_010 0.0408996066 - - -
5 Hb_005714_120 0.0621932833 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_036731_010 0.0861904019 - - -
7 Hb_043960_010 0.0869751452 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_005021_040 0.0897589538 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
9 Hb_166210_010 0.1030707191 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001514_140 0.1082170731 - - -
11 Hb_106274_010 0.1169988084 - - hypothetical protein VITISV_008825 [Vitis vinifera]
12 Hb_018746_010 0.118317591 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
13 Hb_002876_100 0.1212747517 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
14 Hb_000367_150 0.1227539054 - - -
15 Hb_002762_010 0.1279764381 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
16 Hb_002188_050 0.1304016868 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
17 Hb_011987_010 0.1339639864 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
18 Hb_001231_020 0.1345601235 - - -
19 Hb_007456_030 0.1383181533 - - -
20 Hb_005337_010 0.1384834834 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_000362_100 Hb_000362_100 Hb_007632_140 Hb_007632_140 Hb_000362_100--Hb_007632_140 Hb_002121_070 Hb_002121_070 Hb_000362_100--Hb_002121_070 Hb_019135_010 Hb_019135_010 Hb_000362_100--Hb_019135_010 Hb_005714_120 Hb_005714_120 Hb_000362_100--Hb_005714_120 Hb_036731_010 Hb_036731_010 Hb_000362_100--Hb_036731_010 Hb_043960_010 Hb_043960_010 Hb_000362_100--Hb_043960_010 Hb_007632_140--Hb_019135_010 Hb_007632_140--Hb_002121_070 Hb_007632_140--Hb_005714_120 Hb_106274_010 Hb_106274_010 Hb_007632_140--Hb_106274_010 Hb_005021_040 Hb_005021_040 Hb_007632_140--Hb_005021_040 Hb_002121_070--Hb_005714_120 Hb_002121_070--Hb_036731_010 Hb_002121_070--Hb_019135_010 Hb_166210_010 Hb_166210_010 Hb_002121_070--Hb_166210_010 Hb_019135_010--Hb_106274_010 Hb_000367_150 Hb_000367_150 Hb_019135_010--Hb_000367_150 Hb_001231_020 Hb_001231_020 Hb_019135_010--Hb_001231_020 Hb_005714_120--Hb_036731_010 Hb_005714_120--Hb_166210_010 Hb_001514_140 Hb_001514_140 Hb_005714_120--Hb_001514_140 Hb_005714_120--Hb_005021_040 Hb_036731_010--Hb_166210_010 Hb_036731_010--Hb_001514_140 Hb_018746_010 Hb_018746_010 Hb_036731_010--Hb_018746_010 Hb_002762_010 Hb_002762_010 Hb_043960_010--Hb_002762_010 Hb_043960_010--Hb_001514_140 Hb_043960_010--Hb_018746_010 Hb_005337_010 Hb_005337_010 Hb_043960_010--Hb_005337_010 Hb_043960_010--Hb_002121_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0726233 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0685189 0.279533

CAGE analysis