Hb_000362_170

Information

Type -
Description -
Location Contig362: 163860-170729
Sequence    

Annotation

kegg
ID rcu:RCOM_1743330
description ring finger protein, putative
nr
ID XP_012074205.1
description PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
swissprot
ID Q9ZQF9
description E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana GN=MBR1 PE=1 SV=1
trembl
ID A0A067KJ79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09826 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase mbr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37213: 163883-170740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_170 0.0 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
2 Hb_005895_010 0.0355794329 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
3 Hb_002014_040 0.0481211951 - - site-1 protease, putative [Ricinus communis]
4 Hb_001005_030 0.0555085442 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
5 Hb_001002_060 0.0592756471 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
6 Hb_000214_050 0.0619247497 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
7 Hb_000373_080 0.0624630758 - - PREDICTED: serine decarboxylase [Jatropha curcas]
8 Hb_002539_110 0.0627563123 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
9 Hb_000317_510 0.0629159925 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
10 Hb_012215_010 0.0630213235 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
11 Hb_010272_010 0.0631318589 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
12 Hb_003186_020 0.0642831772 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
13 Hb_000737_030 0.0663573837 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
14 Hb_000130_420 0.066811016 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
15 Hb_007800_020 0.0685829388 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
16 Hb_002811_270 0.0686978707 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
17 Hb_000640_070 0.0702787121 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
18 Hb_103747_020 0.0703344209 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
19 Hb_004912_030 0.0723526772 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
20 Hb_000635_040 0.072511618 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]

Gene co-expression network

sample Hb_000362_170 Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_000362_170--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000362_170--Hb_001005_030 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_005895_010--Hb_002014_040 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_002811_270 Hb_002811_270 Hb_000214_050--Hb_002811_270 Hb_000214_050--Hb_003186_020 Hb_000214_050--Hb_000373_080 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_000373_080--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4797 19.2884 29.6902 25.8548 24.3159 22.2587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6296 10.0692 11.5021 14.9017 22.2969

CAGE analysis