Hb_000362_240

Information

Type -
Description -
Location Contig362: 246942-249510
Sequence    

Annotation

kegg
ID rcu:RCOM_0649740
description hypothetical protein
nr
ID XP_002523267.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SB98
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000008_050 0.1516309757 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
3 Hb_022693_150 0.1753465903 - - -
4 Hb_000479_120 0.1991201392 transcription factor TF Family: FAR1 FAR1-related sequence 5 [Theobroma cacao]
5 Hb_059126_010 0.2065856705 - - -
6 Hb_001125_030 0.2093255124 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001364_020 0.2190225307 - - -
8 Hb_005867_010 0.2200109691 - - -
9 Hb_000038_160 0.2280305168 - - putative gag protein [Coffea canephora]
10 Hb_140049_070 0.2283311471 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007127_010 0.2289700348 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
12 Hb_002805_320 0.2295198681 - - -
13 Hb_002163_060 0.2335508762 - - -
14 Hb_002983_100 0.2353750801 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
15 Hb_168978_040 0.2541925265 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
16 Hb_033225_020 0.2557947365 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000922_310 0.2599458972 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
18 Hb_000905_070 0.2621975666 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
19 Hb_029866_010 0.2660701693 - - -
20 Hb_152587_010 0.2661785784 - - -

Gene co-expression network

sample Hb_000362_240 Hb_000362_240 Hb_000008_050 Hb_000008_050 Hb_000362_240--Hb_000008_050 Hb_022693_150 Hb_022693_150 Hb_000362_240--Hb_022693_150 Hb_000479_120 Hb_000479_120 Hb_000362_240--Hb_000479_120 Hb_059126_010 Hb_059126_010 Hb_000362_240--Hb_059126_010 Hb_001125_030 Hb_001125_030 Hb_000362_240--Hb_001125_030 Hb_001364_020 Hb_001364_020 Hb_000362_240--Hb_001364_020 Hb_000008_050--Hb_001364_020 Hb_005867_010 Hb_005867_010 Hb_000008_050--Hb_005867_010 Hb_000008_050--Hb_059126_010 Hb_000038_160 Hb_000038_160 Hb_000008_050--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_000008_050--Hb_140049_070 Hb_084426_010 Hb_084426_010 Hb_022693_150--Hb_084426_010 Hb_022693_150--Hb_000479_120 Hb_022693_150--Hb_000008_050 Hb_022693_150--Hb_001364_020 Hb_000922_310 Hb_000922_310 Hb_022693_150--Hb_000922_310 Hb_004650_080 Hb_004650_080 Hb_000479_120--Hb_004650_080 Hb_002983_100 Hb_002983_100 Hb_000479_120--Hb_002983_100 Hb_000479_120--Hb_000008_050 Hb_168978_040 Hb_168978_040 Hb_000479_120--Hb_168978_040 Hb_059126_010--Hb_001125_030 Hb_033225_020 Hb_033225_020 Hb_059126_010--Hb_033225_020 Hb_029866_010 Hb_029866_010 Hb_059126_010--Hb_029866_010 Hb_013983_010 Hb_013983_010 Hb_059126_010--Hb_013983_010 Hb_059126_010--Hb_002983_100 Hb_001125_030--Hb_029866_010 Hb_001125_030--Hb_013983_010 Hb_001125_030--Hb_033225_020 Hb_000345_480 Hb_000345_480 Hb_001125_030--Hb_000345_480 Hb_000153_040 Hb_000153_040 Hb_001125_030--Hb_000153_040 Hb_001364_020--Hb_005867_010 Hb_001364_020--Hb_000038_160 Hb_001364_020--Hb_140049_070 Hb_002805_320 Hb_002805_320 Hb_001364_020--Hb_002805_320 Hb_002163_060 Hb_002163_060 Hb_001364_020--Hb_002163_060 Hb_027393_020 Hb_027393_020 Hb_001364_020--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.263332 0.0525409 0 0 0.592702 0.0340597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis