Hb_000363_040

Information

Type -
Description -
Location Contig363: 21905-36864
Sequence    

Annotation

kegg
ID rcu:RCOM_0424000
description Protein transport protein Sec24A, putative
nr
ID XP_002533043.1
description Protein transport protein Sec24A, putative [Ricinus communis]
swissprot
ID Q9SFU0
description Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=2 SV=2
trembl
ID B9T474
description Protein transport protein Sec24A, putative OS=Ricinus communis GN=RCOM_0424000 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec24-like at3g07100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37261: 21922-36879 , PASA_asmbl_37262: 33973-36807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_040 0.0 - - Protein transport protein Sec24A, putative [Ricinus communis]
2 Hb_016347_010 0.0563177875 - - protein transporter, putative [Ricinus communis]
3 Hb_002908_050 0.0657562486 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
4 Hb_005305_050 0.0730396983 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
5 Hb_004677_050 0.0766603392 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
6 Hb_000109_180 0.0770617885 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
7 Hb_000976_100 0.0780869268 - - eukaryotic translation elongation factor, putative [Ricinus communis]
8 Hb_004208_050 0.0785009847 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
9 Hb_001105_020 0.0790336615 - - expressed protein, putative [Ricinus communis]
10 Hb_000261_480 0.0791039114 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
11 Hb_103684_010 0.0805527505 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
12 Hb_011819_020 0.0809031319 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
13 Hb_003544_050 0.0816347595 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
14 Hb_000984_170 0.0823758041 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
15 Hb_000189_550 0.0840467645 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
16 Hb_001975_150 0.0844799986 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
17 Hb_001369_360 0.0851665381 - - embryo yellow protein, partial [Manihot esculenta]
18 Hb_001789_150 0.0859872048 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
19 Hb_000358_050 0.0865948964 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
20 Hb_001642_070 0.0867061271 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_040 Hb_000363_040 Hb_016347_010 Hb_016347_010 Hb_000363_040--Hb_016347_010 Hb_002908_050 Hb_002908_050 Hb_000363_040--Hb_002908_050 Hb_005305_050 Hb_005305_050 Hb_000363_040--Hb_005305_050 Hb_004677_050 Hb_004677_050 Hb_000363_040--Hb_004677_050 Hb_000109_180 Hb_000109_180 Hb_000363_040--Hb_000109_180 Hb_000976_100 Hb_000976_100 Hb_000363_040--Hb_000976_100 Hb_000327_250 Hb_000327_250 Hb_016347_010--Hb_000327_250 Hb_016347_010--Hb_004677_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_021576_010 Hb_021576_010 Hb_016347_010--Hb_021576_010 Hb_001876_010 Hb_001876_010 Hb_002908_050--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_002908_050--Hb_000189_550 Hb_000984_170 Hb_000984_170 Hb_002908_050--Hb_000984_170 Hb_000011_060 Hb_000011_060 Hb_002908_050--Hb_000011_060 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100 Hb_005305_050--Hb_000109_180 Hb_005305_050--Hb_016347_010 Hb_005305_050--Hb_000984_170 Hb_003544_050 Hb_003544_050 Hb_005305_050--Hb_003544_050 Hb_005305_050--Hb_002908_050 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_004677_050--Hb_000984_170 Hb_005663_110 Hb_005663_110 Hb_004677_050--Hb_005663_110 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_008748_030 Hb_008748_030 Hb_000109_180--Hb_008748_030 Hb_006059_010 Hb_006059_010 Hb_000109_180--Hb_006059_010 Hb_000012_310 Hb_000012_310 Hb_000109_180--Hb_000012_310 Hb_000227_160 Hb_000227_160 Hb_000109_180--Hb_000227_160 Hb_000237_040 Hb_000237_040 Hb_000976_100--Hb_000237_040 Hb_027445_020 Hb_027445_020 Hb_000976_100--Hb_027445_020 Hb_001369_360 Hb_001369_360 Hb_000976_100--Hb_001369_360 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.27982 17.1638 11.7371 25.7218 12.3749 12.5764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.80544 13.0017 20.4145 30.7491 26.1215

CAGE analysis