Hb_000363_050

Information

Type -
Description -
Location Contig363: 46353-50765
Sequence    

Annotation

kegg
ID rcu:RCOM_0047440
description RNA binding protein, putative
nr
ID XP_012070977.1
description PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SJ41
description Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1
trembl
ID A0A067KT06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00999 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 18-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37264: 46403-50724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_050 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
2 Hb_000049_290 0.1016936048 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
3 Hb_010055_020 0.1073429947 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
4 Hb_003517_090 0.1184730533 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
5 Hb_022487_010 0.1240872419 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
6 Hb_004324_220 0.1241190047 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
7 Hb_004143_140 0.1260990841 - - glycosyltransferase, partial [Arabidopsis thaliana]
8 Hb_044624_010 0.1274759044 - - -
9 Hb_004007_230 0.1276097854 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
10 Hb_000816_160 0.128600989 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
11 Hb_000112_040 0.138416249 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_004994_200 0.1391018948 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
13 Hb_005271_180 0.1400353812 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
14 Hb_002818_070 0.1410520673 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_000331_220 0.1414091512 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001836_010 0.1435314086 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
17 Hb_000753_150 0.1435965183 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
18 Hb_004907_070 0.1442221644 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
19 Hb_175670_010 0.1443557923 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_000313_100 0.1500354477 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_050 Hb_000363_050 Hb_000049_290 Hb_000049_290 Hb_000363_050--Hb_000049_290 Hb_010055_020 Hb_010055_020 Hb_000363_050--Hb_010055_020 Hb_003517_090 Hb_003517_090 Hb_000363_050--Hb_003517_090 Hb_022487_010 Hb_022487_010 Hb_000363_050--Hb_022487_010 Hb_004324_220 Hb_004324_220 Hb_000363_050--Hb_004324_220 Hb_004143_140 Hb_004143_140 Hb_000363_050--Hb_004143_140 Hb_000049_290--Hb_022487_010 Hb_000049_290--Hb_004324_220 Hb_000140_220 Hb_000140_220 Hb_000049_290--Hb_000140_220 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000331_220 Hb_000331_220 Hb_000049_290--Hb_000331_220 Hb_000002_090 Hb_000002_090 Hb_010055_020--Hb_000002_090 Hb_002871_170 Hb_002871_170 Hb_010055_020--Hb_002871_170 Hb_005054_320 Hb_005054_320 Hb_010055_020--Hb_005054_320 Hb_034013_010 Hb_034013_010 Hb_010055_020--Hb_034013_010 Hb_004884_210 Hb_004884_210 Hb_010055_020--Hb_004884_210 Hb_000237_160 Hb_000237_160 Hb_003517_090--Hb_000237_160 Hb_083242_020 Hb_083242_020 Hb_003517_090--Hb_083242_020 Hb_001514_150 Hb_001514_150 Hb_003517_090--Hb_001514_150 Hb_011472_050 Hb_011472_050 Hb_003517_090--Hb_011472_050 Hb_004605_020 Hb_004605_020 Hb_003517_090--Hb_004605_020 Hb_022487_010--Hb_004324_220 Hb_044624_010 Hb_044624_010 Hb_022487_010--Hb_044624_010 Hb_000427_040 Hb_000427_040 Hb_022487_010--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_022487_010--Hb_032779_010 Hb_022487_010--Hb_000140_220 Hb_004324_220--Hb_044624_010 Hb_175670_010 Hb_175670_010 Hb_004324_220--Hb_175670_010 Hb_001046_040 Hb_001046_040 Hb_004324_220--Hb_001046_040 Hb_000313_100 Hb_000313_100 Hb_004324_220--Hb_000313_100 Hb_001989_080 Hb_001989_080 Hb_004143_140--Hb_001989_080 Hb_004143_140--Hb_175670_010 Hb_004143_140--Hb_001046_040 Hb_004143_140--Hb_044624_010 Hb_027474_010 Hb_027474_010 Hb_004143_140--Hb_027474_010 Hb_005271_180 Hb_005271_180 Hb_004143_140--Hb_005271_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.31895 107.287 33.8824 39.8104 2.10832 1.06274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.193012 0.110457 0.15795 21.3109 108.048

CAGE analysis