Hb_000363_130

Information

Type -
Description -
Location Contig363: 96259-102193
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20770g
description POPTRDRAFT_552423; FRIGIDA LIKE 1 family protein
nr
ID XP_012070966.1
description PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
swissprot
ID A0SWL0
description FRIGIDA-like protein 2 OS=Arabidopsis thaliana GN=FRL2 PE=3 SV=1
trembl
ID A0A067KSS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00993 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37279: 96296-101883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_130 0.0 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
2 Hb_001946_300 0.0502760863 - - PREDICTED: F-box protein At-B [Jatropha curcas]
3 Hb_140049_020 0.0624895828 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
4 Hb_000313_340 0.0666820243 - - DNA repair protein xp-E, putative [Ricinus communis]
5 Hb_000865_080 0.0693561071 - - arsenite-resistance protein, putative [Ricinus communis]
6 Hb_030565_090 0.0703639618 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
7 Hb_000136_090 0.0723495021 - - programmed cell death protein, putative [Ricinus communis]
8 Hb_000098_130 0.0745344251 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
9 Hb_147737_010 0.0769589192 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
10 Hb_000997_030 0.0791298981 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
11 Hb_004899_070 0.0797964983 - - PREDICTED: RRP12-like protein [Jatropha curcas]
12 Hb_000264_100 0.0798061039 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000813_100 0.0810447849 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
14 Hb_001080_270 0.0831686994 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
15 Hb_000300_360 0.0849951189 - - PREDICTED: exosome component 10 [Jatropha curcas]
16 Hb_017075_030 0.0850140144 - - helicase, putative [Ricinus communis]
17 Hb_033883_060 0.0855429678 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
18 Hb_007229_040 0.0859594377 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
19 Hb_000120_610 0.0871285063 - - mitotic control protein dis3, putative [Ricinus communis]
20 Hb_000320_380 0.0875197098 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_130 Hb_000363_130 Hb_001946_300 Hb_001946_300 Hb_000363_130--Hb_001946_300 Hb_140049_020 Hb_140049_020 Hb_000363_130--Hb_140049_020 Hb_000313_340 Hb_000313_340 Hb_000363_130--Hb_000313_340 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090 Hb_001946_300--Hb_000313_340 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_007885_070 Hb_007885_070 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000224_060 Hb_000224_060 Hb_000865_080--Hb_000224_060 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_000997_030 Hb_000997_030 Hb_030565_090--Hb_000997_030 Hb_000264_100 Hb_000264_100 Hb_030565_090--Hb_000264_100 Hb_034243_020 Hb_034243_020 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_012180_050 Hb_012180_050 Hb_000136_090--Hb_012180_050 Hb_001028_070 Hb_001028_070 Hb_000136_090--Hb_001028_070 Hb_000300_360 Hb_000300_360 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000120_610 Hb_000120_610 Hb_000136_090--Hb_000120_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.42 100.269 30.7969 26.9116 88.2028 98.219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.7326 30.6017 37.1242 45.5192 23.1454

CAGE analysis