Hb_000363_170

Information

Type -
Description -
Location Contig363: 121641-126776
Sequence    

Annotation

kegg
ID rcu:RCOM_0046630
description hypothetical protein
nr
ID XP_002529043.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FJ57
description Protein TORNADO 1 OS=Arabidopsis thaliana GN=TRN1 PE=2 SV=1
trembl
ID B9SSS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0046630 PE=4 SV=1
Gene Ontology
ID GO:0016740
description protein tornado 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37284: 123265-123477 , PASA_asmbl_37285: 124353-125327 , PASA_asmbl_37286: 125394-125687 , PASA_asmbl_37287: 125861-126480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010866_040 0.1030428313 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
3 Hb_001952_070 0.109513293 - - 40S ribosomal protein S6B [Hevea brasiliensis]
4 Hb_002740_130 0.1225618572 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
5 Hb_005215_080 0.135270134 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
6 Hb_002493_100 0.139197376 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
7 Hb_001439_180 0.1416014048 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
8 Hb_000370_030 0.1419514771 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
9 Hb_001295_020 0.1444825002 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
10 Hb_006829_040 0.1446133398 - - hypothetical protein POPTR_0001s44750g [Populus trichocarpa]
11 Hb_002169_010 0.1447562116 - - PREDICTED: la-related protein 6B [Jatropha curcas]
12 Hb_005288_120 0.1455442818 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
13 Hb_000457_060 0.1468315174 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_000661_170 0.1500023457 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
15 Hb_000369_060 0.1507130854 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_001943_010 0.1510030919 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
17 Hb_001001_060 0.1517707119 - - -
18 Hb_012760_170 0.1517756854 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
19 Hb_006816_360 0.1521970269 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
20 Hb_005280_010 0.1523745817 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_170 Hb_000363_170 Hb_010866_040 Hb_010866_040 Hb_000363_170--Hb_010866_040 Hb_001952_070 Hb_001952_070 Hb_000363_170--Hb_001952_070 Hb_002740_130 Hb_002740_130 Hb_000363_170--Hb_002740_130 Hb_005215_080 Hb_005215_080 Hb_000363_170--Hb_005215_080 Hb_002493_100 Hb_002493_100 Hb_000363_170--Hb_002493_100 Hb_001439_180 Hb_001439_180 Hb_000363_170--Hb_001439_180 Hb_002169_010 Hb_002169_010 Hb_010866_040--Hb_002169_010 Hb_004310_060 Hb_004310_060 Hb_010866_040--Hb_004310_060 Hb_000462_150 Hb_000462_150 Hb_010866_040--Hb_000462_150 Hb_000457_060 Hb_000457_060 Hb_010866_040--Hb_000457_060 Hb_018663_020 Hb_018663_020 Hb_010866_040--Hb_018663_020 Hb_000370_030 Hb_000370_030 Hb_010866_040--Hb_000370_030 Hb_003581_140 Hb_003581_140 Hb_001952_070--Hb_003581_140 Hb_006816_360 Hb_006816_360 Hb_001952_070--Hb_006816_360 Hb_001952_070--Hb_002169_010 Hb_000608_120 Hb_000608_120 Hb_001952_070--Hb_000608_120 Hb_000027_270 Hb_000027_270 Hb_001952_070--Hb_000027_270 Hb_001673_120 Hb_001673_120 Hb_002740_130--Hb_001673_120 Hb_000120_050 Hb_000120_050 Hb_002740_130--Hb_000120_050 Hb_000369_060 Hb_000369_060 Hb_002740_130--Hb_000369_060 Hb_001140_200 Hb_001140_200 Hb_002740_130--Hb_001140_200 Hb_000258_430 Hb_000258_430 Hb_002740_130--Hb_000258_430 Hb_002014_080 Hb_002014_080 Hb_005215_080--Hb_002014_080 Hb_005215_080--Hb_000462_150 Hb_009118_010 Hb_009118_010 Hb_005215_080--Hb_009118_010 Hb_123475_010 Hb_123475_010 Hb_005215_080--Hb_123475_010 Hb_005215_080--Hb_000370_030 Hb_005215_080--Hb_010866_040 Hb_004225_020 Hb_004225_020 Hb_002493_100--Hb_004225_020 Hb_002026_100 Hb_002026_100 Hb_002493_100--Hb_002026_100 Hb_002039_010 Hb_002039_010 Hb_002493_100--Hb_002039_010 Hb_002027_120 Hb_002027_120 Hb_002493_100--Hb_002027_120 Hb_001001_060 Hb_001001_060 Hb_002493_100--Hb_001001_060 Hb_001516_100 Hb_001516_100 Hb_002493_100--Hb_001516_100 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0846 3.11473 0.633233 2.82113 10.4734 20.0238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.27763 3.27353 12.7488 8.83609 1.73944

CAGE analysis