Hb_000363_180

Information

Type -
Description -
Location Contig363: 126964-130131
Sequence    

Annotation

kegg
ID rcu:RCOM_0046620
description hypothetical protein
nr
ID XP_012070957.1
description PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00988 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37289: 127112-129946 , PASA_asmbl_37290: 126966-130004 , PASA_asmbl_37291: 126966-129563 , PASA_asmbl_37292: 128443-129893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_180 0.0 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
2 Hb_000196_010 0.0739292623 - - Patellin-5, putative [Ricinus communis]
3 Hb_009745_010 0.0755261672 - - cellulose synthase-like protein [Populus tomentosa]
4 Hb_000732_230 0.1035464601 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
5 Hb_000950_040 0.1038644956 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_001195_420 0.1048084302 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
7 Hb_001009_150 0.1084460482 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
8 Hb_114943_020 0.1135122872 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
9 Hb_001522_040 0.1204839293 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_003849_120 0.12124163 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
11 Hb_006949_060 0.1215155943 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
12 Hb_000012_400 0.1237565544 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
13 Hb_002685_030 0.1251356109 - - PREDICTED: protein SMG7L [Jatropha curcas]
14 Hb_002539_050 0.1255421795 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
15 Hb_010315_100 0.1255745009 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
16 Hb_002909_100 0.1266171844 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
17 Hb_002740_040 0.1272457237 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
18 Hb_000015_150 0.1300660833 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
19 Hb_001221_390 0.1312940015 - - Phospholipase C 4 precursor, putative [Ricinus communis]
20 Hb_010407_030 0.1333336405 - - PREDICTED: casein kinase I-like [Jatropha curcas]

Gene co-expression network

sample Hb_000363_180 Hb_000363_180 Hb_000196_010 Hb_000196_010 Hb_000363_180--Hb_000196_010 Hb_009745_010 Hb_009745_010 Hb_000363_180--Hb_009745_010 Hb_000732_230 Hb_000732_230 Hb_000363_180--Hb_000732_230 Hb_000950_040 Hb_000950_040 Hb_000363_180--Hb_000950_040 Hb_001195_420 Hb_001195_420 Hb_000363_180--Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_000363_180--Hb_001009_150 Hb_000196_010--Hb_009745_010 Hb_002909_100 Hb_002909_100 Hb_000196_010--Hb_002909_100 Hb_000196_010--Hb_000950_040 Hb_000196_010--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_000196_010--Hb_052117_010 Hb_009745_010--Hb_002909_100 Hb_001522_040 Hb_001522_040 Hb_009745_010--Hb_001522_040 Hb_009745_010--Hb_052117_010 Hb_001898_020 Hb_001898_020 Hb_009745_010--Hb_001898_020 Hb_000732_230--Hb_000950_040 Hb_115513_040 Hb_115513_040 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000227_320 Hb_000227_320 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_000950_040--Hb_052117_010 Hb_000950_040--Hb_000227_320 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_000950_040--Hb_115513_040 Hb_001195_420--Hb_001009_150 Hb_003430_080 Hb_003430_080 Hb_001195_420--Hb_003430_080 Hb_005694_180 Hb_005694_180 Hb_001195_420--Hb_005694_180 Hb_000012_400 Hb_000012_400 Hb_001195_420--Hb_000012_400 Hb_001221_390 Hb_001221_390 Hb_001195_420--Hb_001221_390 Hb_002739_120 Hb_002739_120 Hb_001009_150--Hb_002739_120 Hb_010407_030 Hb_010407_030 Hb_001009_150--Hb_010407_030 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_001009_150--Hb_006949_060 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7331 60.7607 60.4779 83.837 14.8066 18.3367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08897 3.26993 4.64314 36.032 32.5135

CAGE analysis