Hb_000363_200

Information

Type -
Description -
Location Contig363: 153776-156917
Sequence    

Annotation

kegg
ID rcu:RCOM_0046320
description 40S ribosomal protein S8, putative
nr
ID XP_002529032.1
description 40S ribosomal protein S8, putative [Ricinus communis]
swissprot
ID Q08069
description 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2
trembl
ID B9SSR3
description 40S ribosomal protein S8 OS=Ricinus communis GN=RCOM_0046320 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37296: 145723-157002 , PASA_asmbl_37297: 145729-156918 , PASA_asmbl_37298: 145752-156664 , PASA_asmbl_37299: 155550-155668
cDNA
(Sanger)
(ID:Location)		 004_F17.ab1: 145729-156727 , 016_F14.ab1: 145732-156739 , 018_L21.ab1: 145732-155932 , 023_E20.ab1: 145732-156636 , 025_L11.ab1: 145729-156729 , 030_B05.ab1: 145732-156699 , 051_N22.ab1: 145728-156683

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_200 0.0 - - 40S ribosomal protein S8, putative [Ricinus communis]
2 Hb_003226_280 0.0707000014 - - PREDICTED: peter Pan-like protein [Populus euphratica]
3 Hb_000865_070 0.0868940406 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
4 Hb_003097_210 0.0923397122 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
5 Hb_001545_060 0.0947531278 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
6 Hb_002078_460 0.0956005464 - - -
7 Hb_116898_010 0.0957678563 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
8 Hb_148930_010 0.095905061 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
9 Hb_003938_180 0.0985095106 - - lesion inducing family protein [Populus trichocarpa]
10 Hb_148200_010 0.0992232562 - - hypothetical protein 33 [Hevea brasiliensis]
11 Hb_007161_010 0.1047624267 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
12 Hb_000030_100 0.1073769453 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
13 Hb_000239_010 0.1077806441 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_001016_090 0.1082577353 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
15 Hb_000089_160 0.1102542778 - - 60S ribosomal protein L5B [Hevea brasiliensis]
16 Hb_005614_050 0.1108523812 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
17 Hb_000329_330 0.1116540783 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
18 Hb_007943_090 0.1133352006 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
19 Hb_001616_060 0.1155027866 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
20 Hb_001862_100 0.1155408516 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_200 Hb_000363_200 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000865_070 Hb_000865_070 Hb_000363_200--Hb_000865_070 Hb_003097_210 Hb_003097_210 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_002078_460 Hb_002078_460 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_000239_010 Hb_000239_010 Hb_003226_280--Hb_000239_010 Hb_003226_280--Hb_000865_070 Hb_148200_010 Hb_148200_010 Hb_003226_280--Hb_148200_010 Hb_000030_100 Hb_000030_100 Hb_003226_280--Hb_000030_100 Hb_000089_160 Hb_000089_160 Hb_003226_280--Hb_000089_160 Hb_000865_070--Hb_000089_160 Hb_010560_040 Hb_010560_040 Hb_000865_070--Hb_010560_040 Hb_000865_070--Hb_000030_100 Hb_000865_070--Hb_002078_460 Hb_155764_010 Hb_155764_010 Hb_003097_210--Hb_155764_010 Hb_003097_210--Hb_010560_040 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003097_210--Hb_003226_280 Hb_003097_210--Hb_000865_070 Hb_003376_130 Hb_003376_130 Hb_001545_060--Hb_003376_130 Hb_000224_090 Hb_000224_090 Hb_001545_060--Hb_000224_090 Hb_000069_100 Hb_000069_100 Hb_001545_060--Hb_000069_100 Hb_017862_010 Hb_017862_010 Hb_001545_060--Hb_017862_010 Hb_000193_200 Hb_000193_200 Hb_001545_060--Hb_000193_200 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_007382_150 Hb_007382_150 Hb_002078_460--Hb_007382_150 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220 Hb_116898_010--Hb_000239_010 Hb_116898_010--Hb_155764_010 Hb_027073_040 Hb_027073_040 Hb_116898_010--Hb_027073_040 Hb_002471_080 Hb_002471_080 Hb_116898_010--Hb_002471_080 Hb_116898_010--Hb_003226_280 Hb_012675_060 Hb_012675_060 Hb_116898_010--Hb_012675_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
351.201 71.8873 107.894 141.004 288.306 416.505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
832.425 1110.45 994.705 551.256 97.8624

CAGE analysis