Hb_000363_260

Information

Type -
Description -
Location Contig363: 199876-207836
Sequence    

Annotation

kegg
ID rcu:RCOM_0046160
description glycerophosphoryl diester phosphodiesterase, putative
nr
ID XP_002529027.1
description glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
swissprot
ID Q9SZ11
description Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana GN=GDPDL3 PE=1 SV=3
trembl
ID B9SSQ8
description Glycerophosphoryl diester phosphodiesterase, putative OS=Ricinus communis GN=RCOM_0046160 PE=4 SV=1
Gene Ontology
ID GO:0031225
description glycerophosphodiester phosphodiesterase gdpdl3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37303: 199904-207826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_260 0.0 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
2 Hb_002774_120 0.1273847088 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
3 Hb_001119_070 0.1416748951 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
4 Hb_002681_120 0.1436585022 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
5 Hb_001450_040 0.157552291 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
6 Hb_003929_190 0.1589630199 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
7 Hb_000077_100 0.159848112 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
8 Hb_006570_090 0.1611997099 - - tubulin beta chain, putative [Ricinus communis]
9 Hb_000963_050 0.1629058988 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
10 Hb_006351_020 0.1649570378 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_001329_180 0.1692314795 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
12 Hb_000049_270 0.1693462835 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
13 Hb_000581_030 0.1699885104 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002272_200 0.1699949641 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
15 Hb_064546_010 0.1712500492 - - PREDICTED: peroxidase 3 [Jatropha curcas]
16 Hb_179960_010 0.1716255981 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
17 Hb_000236_160 0.1730119025 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
18 Hb_030565_100 0.1741041802 - - serine hydroxymethyltransferase, putative [Ricinus communis]
19 Hb_000023_110 0.1776562691 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
20 Hb_000684_220 0.1787946395 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_260 Hb_000363_260 Hb_002774_120 Hb_002774_120 Hb_000363_260--Hb_002774_120 Hb_001119_070 Hb_001119_070 Hb_000363_260--Hb_001119_070 Hb_002681_120 Hb_002681_120 Hb_000363_260--Hb_002681_120 Hb_001450_040 Hb_001450_040 Hb_000363_260--Hb_001450_040 Hb_003929_190 Hb_003929_190 Hb_000363_260--Hb_003929_190 Hb_000077_100 Hb_000077_100 Hb_000363_260--Hb_000077_100 Hb_000684_220 Hb_000684_220 Hb_002774_120--Hb_000684_220 Hb_006570_090 Hb_006570_090 Hb_002774_120--Hb_006570_090 Hb_002774_120--Hb_003929_190 Hb_179960_010 Hb_179960_010 Hb_002774_120--Hb_179960_010 Hb_003540_120 Hb_003540_120 Hb_002774_120--Hb_003540_120 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_006615_230 Hb_006615_230 Hb_001119_070--Hb_006615_230 Hb_158092_040 Hb_158092_040 Hb_001119_070--Hb_158092_040 Hb_000806_130 Hb_000806_130 Hb_001119_070--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001119_070--Hb_000696_070 Hb_189003_070 Hb_189003_070 Hb_001119_070--Hb_189003_070 Hb_002681_120--Hb_003540_120 Hb_019654_060 Hb_019654_060 Hb_002681_120--Hb_019654_060 Hb_002681_120--Hb_001119_070 Hb_000581_030 Hb_000581_030 Hb_002681_120--Hb_000581_030 Hb_002681_120--Hb_003929_190 Hb_000932_050 Hb_000932_050 Hb_001450_040--Hb_000932_050 Hb_000527_080 Hb_000527_080 Hb_001450_040--Hb_000527_080 Hb_003408_010 Hb_003408_010 Hb_001450_040--Hb_003408_010 Hb_031284_030 Hb_031284_030 Hb_001450_040--Hb_031284_030 Hb_000023_110 Hb_000023_110 Hb_001450_040--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_001450_040--Hb_012807_150 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_030565_100 Hb_030565_100 Hb_000077_100--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_000077_100--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_000077_100--Hb_029223_040 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000193_210 Hb_000193_210 Hb_000077_100--Hb_000193_210 Hb_000580_110 Hb_000580_110 Hb_000077_100--Hb_000580_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97071 3.09573 15.4295 47.3643 4.6858 1.93824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61247 0.906327 0.939182 9.02945 11.5205

CAGE analysis