Hb_000363_280

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig363: 222016-224499
Sequence    

Annotation

kegg
ID csv:101217066
description uncharacterized LOC101217066
nr
ID XP_004150254.1
description PREDICTED: angiomotin [Cucumis sativus]
swissprot
ID Q08747
description Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1
trembl
ID A0A0A0LEG4
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G758990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37306: 221855-224621 , PASA_asmbl_37307: 221861-223930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_280 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
2 Hb_011909_060 0.0561955418 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
3 Hb_000120_420 0.0731568265 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
4 Hb_003430_030 0.0744748124 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
5 Hb_000336_110 0.0805065387 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
6 Hb_005054_190 0.0805271143 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
7 Hb_000264_080 0.0825527328 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
8 Hb_009771_100 0.0920725141 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
9 Hb_000227_310 0.0968827817 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
10 Hb_002902_020 0.0983859975 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
11 Hb_003470_030 0.0986828614 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
12 Hb_000926_010 0.0989521444 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
13 Hb_009780_100 0.1025273274 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
14 Hb_000061_490 0.1030950856 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
15 Hb_002997_160 0.1055514562 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
16 Hb_167381_020 0.1061126742 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
17 Hb_001231_030 0.107666714 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
18 Hb_000230_430 0.1101926315 - - catalytic, putative [Ricinus communis]
19 Hb_031711_010 0.110479259 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
20 Hb_096819_010 0.1114363911 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_280 Hb_000363_280 Hb_011909_060 Hb_011909_060 Hb_000363_280--Hb_011909_060 Hb_000120_420 Hb_000120_420 Hb_000363_280--Hb_000120_420 Hb_003430_030 Hb_003430_030 Hb_000363_280--Hb_003430_030 Hb_000336_110 Hb_000336_110 Hb_000363_280--Hb_000336_110 Hb_005054_190 Hb_005054_190 Hb_000363_280--Hb_005054_190 Hb_000264_080 Hb_000264_080 Hb_000363_280--Hb_000264_080 Hb_011909_060--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_011909_060--Hb_009771_100 Hb_031711_010 Hb_031711_010 Hb_011909_060--Hb_031711_010 Hb_001141_370 Hb_001141_370 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_000120_420--Hb_003430_030 Hb_003430_030--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_003430_030--Hb_005610_080 Hb_000024_120 Hb_000024_120 Hb_003430_030--Hb_000024_120 Hb_000345_490 Hb_000345_490 Hb_003430_030--Hb_000345_490 Hb_000336_110--Hb_000264_080 Hb_000336_110--Hb_000120_420 Hb_000336_110--Hb_009771_100 Hb_000336_110--Hb_167381_020 Hb_000069_590 Hb_000069_590 Hb_000336_110--Hb_000069_590 Hb_005054_190--Hb_000024_120 Hb_005054_190--Hb_005610_080 Hb_005054_190--Hb_000345_490 Hb_011918_050 Hb_011918_050 Hb_005054_190--Hb_011918_050 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000264_080--Hb_000227_310 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.5583 59.8886 33.2371 16.8852 25.2032 29.817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5209 9.60541 8.46296 13.3769 12.9532

CAGE analysis