Hb_000363_290

Information

Type -
Description -
Location Contig363: 228478-236840
Sequence    

Annotation

kegg
ID rcu:RCOM_0955100
description fimbrin, putative
nr
ID XP_002515869.1
description fimbrin, putative [Ricinus communis]
swissprot
ID Q7G188
description Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2
trembl
ID B9RQ50
description Fimbrin, putative OS=Ricinus communis GN=RCOM_0955100 PE=4 SV=1
Gene Ontology
ID GO:0003779
description fimbrin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37308: 228440-228996 , PASA_asmbl_37309: 229254-230554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_290 0.0 - - fimbrin, putative [Ricinus communis]
2 Hb_002042_050 0.0697790296 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
3 Hb_001014_070 0.0723897707 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
4 Hb_000703_190 0.0791510615 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
5 Hb_000567_230 0.0819064015 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
6 Hb_001817_170 0.0831844758 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
7 Hb_000243_260 0.0843028453 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
8 Hb_000025_350 0.0856707696 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
9 Hb_003758_010 0.0862006323 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
10 Hb_000406_210 0.0865650965 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
11 Hb_000260_460 0.0879318567 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
12 Hb_002639_040 0.0897054506 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
13 Hb_002071_070 0.0898233377 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
14 Hb_001014_060 0.0907380435 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
15 Hb_006100_020 0.0911325658 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_074197_040 0.0929586611 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
17 Hb_001124_130 0.0944259084 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_000773_040 0.0958181465 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
19 Hb_000815_300 0.0969549408 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
20 Hb_000078_140 0.0970900477 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_290 Hb_000363_290 Hb_002042_050 Hb_002042_050 Hb_000363_290--Hb_002042_050 Hb_001014_070 Hb_001014_070 Hb_000363_290--Hb_001014_070 Hb_000703_190 Hb_000703_190 Hb_000363_290--Hb_000703_190 Hb_000567_230 Hb_000567_230 Hb_000363_290--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_000363_290--Hb_001817_170 Hb_000243_260 Hb_000243_260 Hb_000363_290--Hb_000243_260 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_002042_050--Hb_000567_230 Hb_002042_050--Hb_001817_170 Hb_001014_060 Hb_001014_060 Hb_001014_070--Hb_001014_060 Hb_000025_350 Hb_000025_350 Hb_001014_070--Hb_000025_350 Hb_001357_200 Hb_001357_200 Hb_001014_070--Hb_001357_200 Hb_000046_540 Hb_000046_540 Hb_001014_070--Hb_000046_540 Hb_074197_040 Hb_074197_040 Hb_001014_070--Hb_074197_040 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000317_040 Hb_000317_040 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_000567_230--Hb_002272_030 Hb_000567_230--Hb_001817_170 Hb_000567_230--Hb_000703_190 Hb_000567_230--Hb_006100_020 Hb_000567_230--Hb_000139_080 Hb_003758_010 Hb_003758_010 Hb_001817_170--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_001817_170--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_001817_170--Hb_000139_080 Hb_011618_070 Hb_011618_070 Hb_000243_260--Hb_011618_070 Hb_000243_260--Hb_020178_040 Hb_011883_020 Hb_011883_020 Hb_000243_260--Hb_011883_020 Hb_000243_260--Hb_003758_010 Hb_002631_210 Hb_002631_210 Hb_000243_260--Hb_002631_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03382 5.18168 6.99674 7.23531 4.47783 2.08812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.26462 4.17352 5.3438 5.88281 7.62809

CAGE analysis