Hb_000363_320

Information

Type -
Description -
Location Contig363: 296195-298750
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G049200g
description hypothetical protein
nr
ID XP_012070934.1
description PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
swissprot
ID Q9FLN5
description V-type proton ATPase subunit e1 OS=Arabidopsis thaliana GN=VHA-e1 PE=2 SV=1
trembl
ID V7BNC2
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G049200g PE=4 SV=1
Gene Ontology
ID GO:0033179
description v-type proton atpase subunit e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37318: 296107-298754
cDNA
(Sanger)
(ID:Location)		 049_G18.ab1: 296107-298754

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_320 0.0 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
2 Hb_000699_160 0.0825566993 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
3 Hb_006452_040 0.0943941484 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
4 Hb_001221_310 0.099684661 - - sec61 gamma subunit, putative [Ricinus communis]
5 Hb_005278_020 0.1034644403 - - PREDICTED: sorcin-like [Jatropha curcas]
6 Hb_003018_050 0.1043744841 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
7 Hb_026314_020 0.1044387463 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
8 Hb_012022_120 0.1050505795 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
9 Hb_000826_100 0.106810881 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
10 Hb_001842_040 0.1069949187 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
11 Hb_001158_150 0.1075161141 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
12 Hb_000107_300 0.1131466913 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
13 Hb_006915_040 0.1189237297 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
14 Hb_001882_070 0.1192623171 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
15 Hb_002631_020 0.1221342052 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
16 Hb_000995_040 0.122443842 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005063_050 0.1224976876 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
18 Hb_143496_010 0.1226604787 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
19 Hb_000312_090 0.1229408965 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
20 Hb_000084_260 0.1233068285 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000363_320 Hb_000363_320 Hb_000699_160 Hb_000699_160 Hb_000363_320--Hb_000699_160 Hb_006452_040 Hb_006452_040 Hb_000363_320--Hb_006452_040 Hb_001221_310 Hb_001221_310 Hb_000363_320--Hb_001221_310 Hb_005278_020 Hb_005278_020 Hb_000363_320--Hb_005278_020 Hb_003018_050 Hb_003018_050 Hb_000363_320--Hb_003018_050 Hb_026314_020 Hb_026314_020 Hb_000363_320--Hb_026314_020 Hb_010672_060 Hb_010672_060 Hb_000699_160--Hb_010672_060 Hb_005063_050 Hb_005063_050 Hb_000699_160--Hb_005063_050 Hb_000699_160--Hb_001221_310 Hb_143496_010 Hb_143496_010 Hb_000699_160--Hb_143496_010 Hb_012022_120 Hb_012022_120 Hb_000699_160--Hb_012022_120 Hb_002830_020 Hb_002830_020 Hb_000699_160--Hb_002830_020 Hb_006452_040--Hb_003018_050 Hb_002631_020 Hb_002631_020 Hb_006452_040--Hb_002631_020 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_000312_090 Hb_000312_090 Hb_001221_310--Hb_000312_090 Hb_000617_090 Hb_000617_090 Hb_001221_310--Hb_000617_090 Hb_001221_310--Hb_010672_060 Hb_001221_310--Hb_001155_040 Hb_005278_020--Hb_026314_020 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_003018_050--Hb_002631_020 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_000826_100 Hb_000826_100 Hb_026314_020--Hb_000826_100 Hb_002343_060 Hb_002343_060 Hb_026314_020--Hb_002343_060 Hb_000005_090 Hb_000005_090 Hb_026314_020--Hb_000005_090 Hb_019762_020 Hb_019762_020 Hb_026314_020--Hb_019762_020 Hb_001318_250 Hb_001318_250 Hb_026314_020--Hb_001318_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3028 2.33085 16.0921 40.661 17.9895 20.2748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.7035 73.173 30.3625 10.6349 9.78738

CAGE analysis