Hb_000363_330

Information

Type -
Description -
Location Contig363: 304661-306051
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37320: 305017-306105 , PASA_asmbl_37321: 305017-306105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_330 0.0 - - -
2 Hb_130613_010 0.1426035336 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
3 Hb_001911_040 0.1437105069 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
4 Hb_004883_050 0.15335404 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
5 Hb_012760_130 0.1553452226 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
6 Hb_066913_010 0.1642199726 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
7 Hb_145629_010 0.167321846 - - -
8 Hb_007123_060 0.1674441421 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
9 Hb_002344_130 0.1725326651 - - PREDICTED: copper transporter 5 [Jatropha curcas]
10 Hb_006117_060 0.1732748728 - - hypothetical protein CARUB_v10024452mg [Capsella rubella]
11 Hb_000122_050 0.1742748578 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002388_010 0.1770595811 - - -
13 Hb_003038_220 0.1797534733 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
14 Hb_133724_010 0.1800060597 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003992_040 0.1814662966 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
16 Hb_060715_010 0.1818259511 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
17 Hb_000111_030 0.1852747769 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
18 Hb_000003_540 0.1909044661 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
19 Hb_000327_290 0.191047036 - - Histone H4 [Triticum urartu]
20 Hb_000264_290 0.1911143309 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_330 Hb_000363_330 Hb_130613_010 Hb_130613_010 Hb_000363_330--Hb_130613_010 Hb_001911_040 Hb_001911_040 Hb_000363_330--Hb_001911_040 Hb_004883_050 Hb_004883_050 Hb_000363_330--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_000363_330--Hb_012760_130 Hb_066913_010 Hb_066913_010 Hb_000363_330--Hb_066913_010 Hb_145629_010 Hb_145629_010 Hb_000363_330--Hb_145629_010 Hb_000111_030 Hb_000111_030 Hb_130613_010--Hb_000111_030 Hb_133724_010 Hb_133724_010 Hb_130613_010--Hb_133724_010 Hb_011671_480 Hb_011671_480 Hb_130613_010--Hb_011671_480 Hb_130613_010--Hb_001911_040 Hb_005686_120 Hb_005686_120 Hb_130613_010--Hb_005686_120 Hb_001911_040--Hb_011671_480 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_000538_240 Hb_000538_240 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001829_040 Hb_001829_040 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110 Hb_004883_050--Hb_012760_130 Hb_007123_060 Hb_007123_060 Hb_004883_050--Hb_007123_060 Hb_004883_050--Hb_001829_040 Hb_004883_050--Hb_001911_040 Hb_004883_050--Hb_133724_010 Hb_059480_010 Hb_059480_010 Hb_004883_050--Hb_059480_010 Hb_000416_070 Hb_000416_070 Hb_012760_130--Hb_000416_070 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_002388_010 Hb_002388_010 Hb_066913_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_066913_010--Hb_002687_080 Hb_066913_010--Hb_133724_010 Hb_002192_090 Hb_002192_090 Hb_066913_010--Hb_002192_090 Hb_066913_010--Hb_145629_010 Hb_000481_050 Hb_000481_050 Hb_145629_010--Hb_000481_050 Hb_002344_130 Hb_002344_130 Hb_145629_010--Hb_002344_130 Hb_003938_160 Hb_003938_160 Hb_145629_010--Hb_003938_160 Hb_001135_140 Hb_001135_140 Hb_145629_010--Hb_001135_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.67069 25.6083 9.71681 37.4076 8.49081 26.6682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5815 23.5744 5.94982 2.82157 1.80923

CAGE analysis