Hb_000363_350

Information

Type -
Description -
Location Contig363: 309632-315579
Sequence    

Annotation

kegg
ID fve:101312615
description transcription initiation factor TFIID subunit 6-like
nr
ID XP_004294395.1
description PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
swissprot
ID F4HVA6
description Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6B PE=1 SV=1
trembl
ID D7TE54
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37322: 306413-309283 , PASA_asmbl_37323: 306417-309152 , PASA_asmbl_37324: 308375-308697 , PASA_asmbl_37325: 310854-311263
cDNA
(Sanger)
(ID:Location)		 002_D11.ab1: 306417-309152 , 050_L03.ab1: 306423-309070

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_350 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
2 Hb_171718_020 0.0852306498 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
3 Hb_014231_020 0.107639975 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
4 Hb_000011_050 0.1181628505 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
5 Hb_001307_190 0.1183501665 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_000000_340 0.1246287036 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
7 Hb_000062_360 0.1253890869 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
8 Hb_001322_020 0.1269579495 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
9 Hb_000048_080 0.1280227586 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
10 Hb_006452_180 0.1326736112 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_000979_060 0.1354223248 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
12 Hb_000684_100 0.1358734451 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
13 Hb_000009_220 0.1378410866 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
14 Hb_000925_030 0.1386389132 - - ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000421_230 0.1401863325 - - retinal degeneration B beta, putative [Ricinus communis]
16 Hb_001863_160 0.1407992621 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
17 Hb_000086_430 0.1429937876 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
18 Hb_009449_060 0.1432584632 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
19 Hb_004712_190 0.1437715003 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
20 Hb_000098_150 0.1438630306 - - DNA helicase hus2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000363_350 Hb_000363_350 Hb_171718_020 Hb_171718_020 Hb_000363_350--Hb_171718_020 Hb_014231_020 Hb_014231_020 Hb_000363_350--Hb_014231_020 Hb_000011_050 Hb_000011_050 Hb_000363_350--Hb_000011_050 Hb_001307_190 Hb_001307_190 Hb_000363_350--Hb_001307_190 Hb_000000_340 Hb_000000_340 Hb_000363_350--Hb_000000_340 Hb_000062_360 Hb_000062_360 Hb_000363_350--Hb_000062_360 Hb_171718_020--Hb_001307_190 Hb_171718_020--Hb_000011_050 Hb_171718_020--Hb_014231_020 Hb_171718_020--Hb_000000_340 Hb_000617_310 Hb_000617_310 Hb_171718_020--Hb_000617_310 Hb_004712_190 Hb_004712_190 Hb_014231_020--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_000703_160 Hb_000703_160 Hb_014231_020--Hb_000703_160 Hb_005144_210 Hb_005144_210 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_014231_020--Hb_001307_190 Hb_000291_030 Hb_000291_030 Hb_000011_050--Hb_000291_030 Hb_000925_030 Hb_000925_030 Hb_000011_050--Hb_000925_030 Hb_000979_060 Hb_000979_060 Hb_000011_050--Hb_000979_060 Hb_174829_020 Hb_174829_020 Hb_000011_050--Hb_174829_020 Hb_002311_480 Hb_002311_480 Hb_000011_050--Hb_002311_480 Hb_001307_190--Hb_000703_160 Hb_000958_080 Hb_000958_080 Hb_001307_190--Hb_000958_080 Hb_001307_190--Hb_000617_310 Hb_001307_190--Hb_005144_210 Hb_009449_060 Hb_009449_060 Hb_001307_190--Hb_009449_060 Hb_000890_160 Hb_000890_160 Hb_000000_340--Hb_000890_160 Hb_010068_070 Hb_010068_070 Hb_000000_340--Hb_010068_070 Hb_000866_140 Hb_000866_140 Hb_000000_340--Hb_000866_140 Hb_004837_220 Hb_004837_220 Hb_000000_340--Hb_004837_220 Hb_001376_010 Hb_001376_010 Hb_000000_340--Hb_001376_010 Hb_008725_050 Hb_008725_050 Hb_000000_340--Hb_008725_050 Hb_001369_030 Hb_001369_030 Hb_000062_360--Hb_001369_030 Hb_000212_300 Hb_000212_300 Hb_000062_360--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000062_360--Hb_001322_020 Hb_004267_060 Hb_004267_060 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40969 4.52752 7.60974 3.20842 1.36683 1.63826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87767 2.03841 0.495842 1.43659 1.02613

CAGE analysis