Hb_000363_360

Information

Type -
Description -
Location Contig363: 321455-326795
Sequence    

Annotation

kegg
ID pmum:103326559
description serine/threonine-protein phosphatase PP-X isozyme 2
nr
ID XP_007211677.1
description hypothetical protein PRUPE_ppa009146mg [Prunus persica]
swissprot
ID P48528
description Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2
trembl
ID M5WHX1
description Serine/threonine-protein phosphatase OS=Prunus persica GN=PRUPE_ppa009146mg PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp-x isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37328: 321982-326820 , PASA_asmbl_37329: 325622-326140 , PASA_asmbl_37330: 322244-322564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_360 0.0 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
2 Hb_000477_060 0.0597642185 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
3 Hb_000985_060 0.0658254909 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
4 Hb_003697_040 0.0688208271 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
5 Hb_000479_190 0.0700443223 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000221_160 0.0711144012 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
7 Hb_000336_240 0.0755420798 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
8 Hb_003605_090 0.075779948 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
9 Hb_004889_010 0.0773939982 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
10 Hb_000291_080 0.0778470195 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
11 Hb_002111_040 0.0799661346 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
12 Hb_000635_150 0.0818577956 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
13 Hb_019654_030 0.0824858935 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
14 Hb_003108_020 0.0830679458 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
15 Hb_004696_080 0.083635639 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
16 Hb_005306_180 0.0860808202 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
17 Hb_031862_100 0.0865397639 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002007_210 0.0866290473 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
19 Hb_002014_020 0.0868388971 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
20 Hb_000270_370 0.086981822 - - Uncharacterized protein TCM_011954 [Theobroma cacao]

Gene co-expression network

sample Hb_000363_360 Hb_000363_360 Hb_000477_060 Hb_000477_060 Hb_000363_360--Hb_000477_060 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_003697_040 Hb_003697_040 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240 Hb_000477_060--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000477_060--Hb_003605_090 Hb_000116_270 Hb_000116_270 Hb_000477_060--Hb_000116_270 Hb_004934_100 Hb_004934_100 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000985_060--Hb_000479_190 Hb_114310_080 Hb_114310_080 Hb_000985_060--Hb_114310_080 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_000985_060--Hb_029388_030 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_003918_010 Hb_003918_010 Hb_000221_160--Hb_003918_010 Hb_012053_070 Hb_012053_070 Hb_000221_160--Hb_012053_070 Hb_000270_370 Hb_000270_370 Hb_000221_160--Hb_000270_370 Hb_000331_200 Hb_000331_200 Hb_000221_160--Hb_000331_200 Hb_033594_150 Hb_033594_150 Hb_000221_160--Hb_033594_150 Hb_010883_050 Hb_010883_050 Hb_000336_240--Hb_010883_050 Hb_007009_010 Hb_007009_010 Hb_000336_240--Hb_007009_010 Hb_000336_240--Hb_004889_010 Hb_002007_210 Hb_002007_210 Hb_000336_240--Hb_002007_210 Hb_000638_170 Hb_000638_170 Hb_000336_240--Hb_000638_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.17669 3.12052 4.32863 10.8 4.98759 8.10931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6471 13.8262 12.4012 9.37401 5.30077

CAGE analysis