Hb_000363_390

Information

Type -
Description -
Location Contig363: 346407-349710
Sequence    

Annotation

kegg
ID rcu:RCOM_0546890
description Benzoate carboxyl methyltransferase, putative (EC:2.1.1.141)
nr
ID XP_002531204.1
description Benzoate carboxyl methyltransferase, putative [Ricinus communis]
swissprot
ID Q9FLN8
description Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1
trembl
ID B9SYY5
description Benzoate carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_0546890 PE=4 SV=1
Gene Ontology
ID GO:0000287
description indole-3-acetate o-methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37337: 347169-350013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_390 0.0 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
2 Hb_002818_060 0.0973624378 - - zinc finger protein, putative [Ricinus communis]
3 Hb_002894_060 0.1002441825 - - respiratory burst oxidase D [Manihot esculenta]
4 Hb_001007_020 0.1003474974 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
5 Hb_000320_010 0.1055756718 - - conserved hypothetical protein [Ricinus communis]
6 Hb_174639_010 0.1059342569 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_003085_070 0.1063553989 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
8 Hb_000373_020 0.1086179255 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
9 Hb_000134_130 0.113409353 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
10 Hb_001349_050 0.1138476707 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
11 Hb_000022_080 0.114336265 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
12 Hb_017908_010 0.1151478384 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000418_110 0.1177921944 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
14 Hb_000072_230 0.1198060315 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
15 Hb_001623_250 0.1219930214 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
16 Hb_040852_010 0.1221503016 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000878_080 0.1222775711 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
18 Hb_002836_110 0.122912827 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
19 Hb_003894_110 0.1245753115 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
20 Hb_005496_040 0.1246685968 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_390 Hb_000363_390 Hb_002818_060 Hb_002818_060 Hb_000363_390--Hb_002818_060 Hb_002894_060 Hb_002894_060 Hb_000363_390--Hb_002894_060 Hb_001007_020 Hb_001007_020 Hb_000363_390--Hb_001007_020 Hb_000320_010 Hb_000320_010 Hb_000363_390--Hb_000320_010 Hb_174639_010 Hb_174639_010 Hb_000363_390--Hb_174639_010 Hb_003085_070 Hb_003085_070 Hb_000363_390--Hb_003085_070 Hb_001349_050 Hb_001349_050 Hb_002818_060--Hb_001349_050 Hb_001623_250 Hb_001623_250 Hb_002818_060--Hb_001623_250 Hb_002203_010 Hb_002203_010 Hb_002818_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_002818_060--Hb_000359_100 Hb_002818_060--Hb_002894_060 Hb_002894_060--Hb_001349_050 Hb_002894_060--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_002894_060--Hb_000418_110 Hb_019516_010 Hb_019516_010 Hb_002894_060--Hb_019516_010 Hb_000134_130 Hb_000134_130 Hb_002894_060--Hb_000134_130 Hb_002894_060--Hb_001623_250 Hb_001007_020--Hb_000418_110 Hb_001007_020--Hb_000134_130 Hb_001007_020--Hb_174639_010 Hb_003894_110 Hb_003894_110 Hb_001007_020--Hb_003894_110 Hb_001007_020--Hb_001349_050 Hb_000320_010--Hb_000134_130 Hb_040852_010 Hb_040852_010 Hb_000320_010--Hb_040852_010 Hb_000320_010--Hb_001007_020 Hb_000320_010--Hb_003894_110 Hb_003376_020 Hb_003376_020 Hb_000320_010--Hb_003376_020 Hb_000320_010--Hb_174639_010 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_001709_120 Hb_001709_120 Hb_174639_010--Hb_001709_120 Hb_001056_040 Hb_001056_040 Hb_174639_010--Hb_001056_040 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330 Hb_003006_070 Hb_003006_070 Hb_003085_070--Hb_003006_070 Hb_003085_070--Hb_001623_250 Hb_003185_040 Hb_003185_040 Hb_003085_070--Hb_003185_040 Hb_002836_110 Hb_002836_110 Hb_003085_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003085_070--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_003085_070--Hb_000375_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185303 0.191285 4.42155 4.98341 0.0173624 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.12369 0.106813 1.23824

CAGE analysis