Hb_000363_480

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig363: 413435-417089
Sequence    

Annotation

kegg
ID fve:101310789
description upstream activation factor subunit UAF30-like
nr
ID XP_004295850.2
description PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID I3SKK8
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37346: 413369-414043 , PASA_asmbl_37347: 416915-417064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_480 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
2 Hb_000574_480 0.0678066073 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
3 Hb_003226_210 0.0692263794 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
4 Hb_000215_060 0.0694443328 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
5 Hb_001998_050 0.0702044382 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
6 Hb_003656_070 0.0723135081 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
7 Hb_001214_160 0.0725990924 - - 60S ribosomal protein L27B [Hevea brasiliensis]
8 Hb_000349_290 0.0765275262 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
9 Hb_000417_360 0.0798384051 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
10 Hb_001565_080 0.0798962102 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
11 Hb_002925_030 0.0799671007 - - 40S ribosomal protein S16B [Hevea brasiliensis]
12 Hb_011311_010 0.0831470768 - - 60S ribosomal protein L27C [Hevea brasiliensis]
13 Hb_000450_130 0.0839676616 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
14 Hb_000264_090 0.0856646863 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
15 Hb_006816_530 0.0868985156 - - 60S ribosomal protein L18, putative [Ricinus communis]
16 Hb_002660_030 0.087051411 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005883_100 0.0872061751 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
18 Hb_032260_030 0.0877450471 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
19 Hb_004586_320 0.0879862474 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
20 Hb_008921_020 0.0883796208 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000363_480 Hb_000363_480 Hb_000574_480 Hb_000574_480 Hb_000363_480--Hb_000574_480 Hb_003226_210 Hb_003226_210 Hb_000363_480--Hb_003226_210 Hb_000215_060 Hb_000215_060 Hb_000363_480--Hb_000215_060 Hb_001998_050 Hb_001998_050 Hb_000363_480--Hb_001998_050 Hb_003656_070 Hb_003656_070 Hb_000363_480--Hb_003656_070 Hb_001214_160 Hb_001214_160 Hb_000363_480--Hb_001214_160 Hb_000574_480--Hb_003656_070 Hb_000574_480--Hb_001998_050 Hb_002963_010 Hb_002963_010 Hb_000574_480--Hb_002963_010 Hb_008173_090 Hb_008173_090 Hb_000574_480--Hb_008173_090 Hb_012675_060 Hb_012675_060 Hb_000574_480--Hb_012675_060 Hb_000173_220 Hb_000173_220 Hb_000574_480--Hb_000173_220 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_001565_080 Hb_001565_080 Hb_000215_060--Hb_001565_080 Hb_000175_060 Hb_000175_060 Hb_000215_060--Hb_000175_060 Hb_000496_120 Hb_000496_120 Hb_000215_060--Hb_000496_120 Hb_000349_290 Hb_000349_290 Hb_000215_060--Hb_000349_290 Hb_011173_050 Hb_011173_050 Hb_000215_060--Hb_011173_050 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_001998_050--Hb_012675_060 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_003656_070--Hb_004586_320 Hb_001214_160--Hb_006816_530 Hb_000102_020 Hb_000102_020 Hb_001214_160--Hb_000102_020 Hb_011628_040 Hb_011628_040 Hb_001214_160--Hb_011628_040 Hb_004125_110 Hb_004125_110 Hb_001214_160--Hb_004125_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92683 2.59271 1.89029 3.50504 2.57055 3.93369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.30264 13.5643 6.7346 3.73365 1.28397

CAGE analysis