Hb_000364_020

Information

Type -
Description -
Location Contig364: 12472-13960
Sequence    

Annotation

kegg
ID cmo:103501112
description SUMO-conjugating enzyme SCE1
nr
ID XP_011006861.1
description PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
swissprot
ID Q42551
description SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1
trembl
ID A0A0A0LNC3
description Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428410 PE=3 SV=1
Gene Ontology
ID GO:0005634
description sumo-conjugating enzyme sce1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37423: 8206-13897 , PASA_asmbl_37426: 12568-13897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_020 0.0 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
2 Hb_011161_050 0.0685651438 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
3 Hb_000086_550 0.0742223556 - - Os02g0814700 [Oryza sativa Japonica Group]
4 Hb_000283_110 0.0797642511 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
5 Hb_004336_050 0.0805741608 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
6 Hb_000975_110 0.0839861399 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
7 Hb_000751_130 0.08431526 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
8 Hb_004374_140 0.0854426448 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
9 Hb_004032_100 0.0858032697 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
10 Hb_010812_010 0.0862173318 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
11 Hb_000340_140 0.0871341477 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
12 Hb_000024_030 0.0888094981 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
13 Hb_000172_030 0.0904015714 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
14 Hb_180301_010 0.0906927333 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
15 Hb_015175_030 0.0910093233 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
16 Hb_000995_040 0.0963657148 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000087_020 0.0965506809 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
18 Hb_005400_030 0.0966660521 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
19 Hb_008544_010 0.0976579308 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
20 Hb_002631_020 0.0992978124 - - PREDICTED: protein FAM32A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000364_020 Hb_000364_020 Hb_011161_050 Hb_011161_050 Hb_000364_020--Hb_011161_050 Hb_000086_550 Hb_000086_550 Hb_000364_020--Hb_000086_550 Hb_000283_110 Hb_000283_110 Hb_000364_020--Hb_000283_110 Hb_004336_050 Hb_004336_050 Hb_000364_020--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000364_020--Hb_000975_110 Hb_000751_130 Hb_000751_130 Hb_000364_020--Hb_000751_130 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_011161_050--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_003893_050 Hb_003893_050 Hb_000283_110--Hb_003893_050 Hb_002431_050 Hb_002431_050 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_000024_030 Hb_000024_030 Hb_000975_110--Hb_000024_030 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_000975_110--Hb_003561_030 Hb_000975_110--Hb_001307_090 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_000751_130--Hb_004032_100 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.973 21.9371 17.256 69.7232 43.918 117.894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
155.716 196.847 98.6368 29.8072 34.9658

CAGE analysis