Hb_000364_050

Information

Type -
Description -
Location Contig364: 40234-48465
Sequence    

Annotation

kegg
ID rcu:RCOM_0320290
description hypothetical protein
nr
ID XP_012079277.1
description PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
swissprot
ID O23193
description CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2
trembl
ID A0A067K6U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12432 PE=4 SV=1
Gene Ontology
ID GO:0005623
description cbs domain-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37433: 40248-48121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_050 0.0 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
2 Hb_007904_230 0.0586456748 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
3 Hb_004452_120 0.0625169039 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
4 Hb_001269_130 0.0690997264 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
5 Hb_012733_040 0.0715463611 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
6 Hb_006059_030 0.0717485489 - - glutamate dehydrogenase, putative [Ricinus communis]
7 Hb_010863_050 0.0726245043 - - OTU domain-containing protein 6B, putative [Ricinus communis]
8 Hb_000080_130 0.0747845376 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_003266_030 0.0768845599 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
10 Hb_062226_060 0.0773697471 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
11 Hb_012150_030 0.0774674501 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_003053_110 0.0799647511 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
13 Hb_001195_400 0.0818173471 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
14 Hb_000167_110 0.0824464657 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_000174_260 0.0824484113 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
16 Hb_007741_110 0.0842510301 - - -
17 Hb_002078_340 0.0846585483 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
18 Hb_049575_010 0.0850061139 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
19 Hb_035273_020 0.0852585553 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
20 Hb_015675_040 0.0855328734 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000364_050 Hb_000364_050 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_004452_120--Hb_010863_050 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_001269_130--Hb_000080_130 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_012393_030 Hb_012393_030 Hb_006059_030--Hb_012393_030 Hb_006059_030--Hb_012733_040 Hb_005976_080 Hb_005976_080 Hb_006059_030--Hb_005976_080 Hb_000107_270 Hb_000107_270 Hb_006059_030--Hb_000107_270 Hb_006059_030--Hb_001195_400 Hb_010863_050--Hb_012150_030 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_010863_050--Hb_035273_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0192 12.8509 33.3222 26.1411 10.217 12.2598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3813 24.8664 19.4994 26.8059 38.3561

CAGE analysis