Hb_000364_060

Information

Type -
Description -
Location Contig364: 49736-54378
Sequence    

Annotation

kegg
ID tcc:TCM_000667
description Poly(A) binding protein 8
nr
ID BAJ53195.1
description JHL03K20.4 [Jatropha curcas]
swissprot
ID O22173
description Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1
trembl
ID E6NU85
description Polyadenylate-binding protein OS=Jatropha curcas GN=JHL03K20.4 PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37434: 49883-54315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_060 0.0 - - JHL03K20.4 [Jatropha curcas]
2 Hb_002272_180 0.0646196472 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
3 Hb_007668_040 0.0650854157 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
4 Hb_002174_060 0.0680468578 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
5 Hb_004198_010 0.0697911679 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
6 Hb_001341_050 0.0718431299 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
7 Hb_004450_010 0.0738891346 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
8 Hb_000956_030 0.0762069978 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
9 Hb_010423_020 0.0768470409 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
10 Hb_003434_060 0.0769044274 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
11 Hb_020719_030 0.0784036593 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
12 Hb_004195_280 0.0802208877 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
13 Hb_002044_060 0.0808786132 - - elongation factor ts, putative [Ricinus communis]
14 Hb_002942_080 0.0838143052 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
15 Hb_000059_150 0.0874425306 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_001863_110 0.0882490782 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_021409_170 0.089106897 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
18 Hb_003464_020 0.0892223519 - - srpk, putative [Ricinus communis]
19 Hb_030131_040 0.0908415328 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
20 Hb_000436_040 0.0912324037 - - PREDICTED: transportin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000364_060 Hb_000364_060 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_007668_040 Hb_007668_040 Hb_000364_060--Hb_007668_040 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_001341_050 Hb_001341_050 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_020719_030 Hb_020719_030 Hb_002272_180--Hb_020719_030 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_012490_030 Hb_012490_030 Hb_002272_180--Hb_012490_030 Hb_002272_180--Hb_004450_010 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060 Hb_002942_080 Hb_002942_080 Hb_007668_040--Hb_002942_080 Hb_012132_040 Hb_012132_040 Hb_007668_040--Hb_012132_040 Hb_007668_040--Hb_001341_050 Hb_024990_010 Hb_024990_010 Hb_007668_040--Hb_024990_010 Hb_003006_060 Hb_003006_060 Hb_007668_040--Hb_003006_060 Hb_004195_280 Hb_004195_280 Hb_002174_060--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110 Hb_000956_030 Hb_000956_030 Hb_004198_010--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_004198_010--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_004198_010--Hb_000120_500 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_001341_050--Hb_002942_080 Hb_001341_050--Hb_004198_010 Hb_001341_050--Hb_003434_060 Hb_001341_050--Hb_010423_020 Hb_002044_060 Hb_002044_060 Hb_004450_010--Hb_002044_060 Hb_004450_010--Hb_000956_030 Hb_000768_110 Hb_000768_110 Hb_004450_010--Hb_000768_110 Hb_004370_030 Hb_004370_030 Hb_004450_010--Hb_004370_030 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.9 18.7144 26.8884 28.591 71.4668 110.603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3926 33.0952 25.0727 33.4733 26.4698

CAGE analysis