Hb_000364_070

Information

Type transcription factor
Description TF Family: AP2
Location Contig364: 78874-81929
Sequence    

Annotation

kegg
ID vvi:100268051
description AP2; transcription factor APETALA2
nr
ID XP_012079272.1
description PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
swissprot
ID P47927
description Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
trembl
ID E6NU83
description JHL03K20.2 protein OS=Jatropha curcas GN=JHL03K20.2 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor apetala2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37435: 79171-79325 , PASA_asmbl_37436: 80427-81242 , PASA_asmbl_37437: 81341-81754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_070 0.0 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
2 Hb_011537_070 0.2312739481 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
3 Hb_116125_010 0.2659238183 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
4 Hb_002735_040 0.2875189948 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
5 Hb_000270_210 0.2888139949 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
6 Hb_000984_250 0.289550172 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
7 Hb_001952_130 0.2906649177 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
8 Hb_018344_010 0.292432972 - - PREDICTED: endochitinase 2-like [Populus euphratica]
9 Hb_001091_030 0.2961834446 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
10 Hb_010531_050 0.2982338946 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
11 Hb_001948_010 0.2990988367 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
12 Hb_002232_150 0.3151848979 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
13 Hb_001675_120 0.3185567521 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
14 Hb_000640_150 0.3213864239 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
15 Hb_004770_040 0.3213963846 - - PREDICTED: serine carboxypeptidase-like 31 [Eucalyptus grandis]
16 Hb_001146_090 0.3228855865 - - valacyclovir hydrolase, putative [Ricinus communis]
17 Hb_059464_010 0.3237050604 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012384_050 0.3300746752 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
19 Hb_176844_010 0.330519438 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_000521_310 0.3320245892 - - -

Gene co-expression network

sample Hb_000364_070 Hb_000364_070 Hb_011537_070 Hb_011537_070 Hb_000364_070--Hb_011537_070 Hb_116125_010 Hb_116125_010 Hb_000364_070--Hb_116125_010 Hb_002735_040 Hb_002735_040 Hb_000364_070--Hb_002735_040 Hb_000270_210 Hb_000270_210 Hb_000364_070--Hb_000270_210 Hb_000984_250 Hb_000984_250 Hb_000364_070--Hb_000984_250 Hb_001952_130 Hb_001952_130 Hb_000364_070--Hb_001952_130 Hb_000445_300 Hb_000445_300 Hb_011537_070--Hb_000445_300 Hb_176368_010 Hb_176368_010 Hb_011537_070--Hb_176368_010 Hb_000003_390 Hb_000003_390 Hb_011537_070--Hb_000003_390 Hb_011537_070--Hb_002735_040 Hb_059464_010 Hb_059464_010 Hb_011537_070--Hb_059464_010 Hb_018344_010 Hb_018344_010 Hb_116125_010--Hb_018344_010 Hb_116125_010--Hb_000270_210 Hb_002259_040 Hb_002259_040 Hb_116125_010--Hb_002259_040 Hb_105085_010 Hb_105085_010 Hb_116125_010--Hb_105085_010 Hb_002232_150 Hb_002232_150 Hb_116125_010--Hb_002232_150 Hb_005389_110 Hb_005389_110 Hb_116125_010--Hb_005389_110 Hb_002735_040--Hb_105085_010 Hb_002804_050 Hb_002804_050 Hb_002735_040--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002735_040--Hb_006615_100 Hb_002843_050 Hb_002843_050 Hb_002735_040--Hb_002843_050 Hb_005122_060 Hb_005122_060 Hb_002735_040--Hb_005122_060 Hb_012384_050 Hb_012384_050 Hb_002735_040--Hb_012384_050 Hb_000270_210--Hb_005389_110 Hb_000640_150 Hb_000640_150 Hb_000270_210--Hb_000640_150 Hb_000270_210--Hb_018344_010 Hb_000270_210--Hb_002232_150 Hb_000270_210--Hb_002735_040 Hb_000984_250--Hb_001952_130 Hb_006915_020 Hb_006915_020 Hb_000984_250--Hb_006915_020 Hb_000789_130 Hb_000789_130 Hb_000984_250--Hb_000789_130 Hb_010531_050 Hb_010531_050 Hb_000984_250--Hb_010531_050 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020 Hb_003388_050 Hb_003388_050 Hb_001952_130--Hb_003388_050 Hb_001675_120 Hb_001675_120 Hb_001952_130--Hb_001675_120 Hb_004525_070 Hb_004525_070 Hb_001952_130--Hb_004525_070 Hb_001952_130--Hb_006915_020 Hb_031527_070 Hb_031527_070 Hb_001952_130--Hb_031527_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95698 1.66729 1.42963 0.582637 1.41693 0.955622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0170123 0 4.83077 0.755857

CAGE analysis