Hb_000364_080

Information

Type -
Description -
Location Contig364: 92111-98541
Sequence    

Annotation

kegg
ID rcu:RCOM_1410600
description OTU domain-containing protein, putative
nr
ID XP_012079269.1
description PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
swissprot
ID B1AZ99
description OTU domain-containing protein 3 OS=Mus musculus GN=Otud3 PE=3 SV=1
trembl
ID E6NU82
description JHL03K20.1 protein OS=Jatropha curcas GN=JHL03K20.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37439: 92491-93215 , PASA_asmbl_37441: 94482-94616 , PASA_asmbl_37442: 93251-95321 , PASA_asmbl_37443: 95354-97203 , PASA_asmbl_37445: 96679-96811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_080 0.0 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
2 Hb_002942_160 0.0687508385 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_000523_090 0.0715115387 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
4 Hb_002044_060 0.0759993764 - - elongation factor ts, putative [Ricinus communis]
5 Hb_134364_010 0.0790522302 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
6 Hb_002067_020 0.0794126375 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010642_030 0.0827045001 - - zinc phosphodiesterase, putative [Ricinus communis]
8 Hb_000567_050 0.085150889 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
9 Hb_031862_180 0.0876862644 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
10 Hb_154745_010 0.0884900307 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_007262_020 0.0889105466 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
12 Hb_004370_030 0.093015916 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
13 Hb_000364_060 0.0937179758 - - JHL03K20.4 [Jatropha curcas]
14 Hb_000212_240 0.0964677203 - - short-chain dehydrogenase, putative [Ricinus communis]
15 Hb_023386_040 0.0980889542 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
16 Hb_007741_020 0.0985113835 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
17 Hb_007643_050 0.0998450802 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_010423_020 0.1010497013 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
19 Hb_003641_060 0.1017605397 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
20 Hb_187739_020 0.1020782297 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_000364_080 Hb_000364_080 Hb_002942_160 Hb_002942_160 Hb_000364_080--Hb_002942_160 Hb_000523_090 Hb_000523_090 Hb_000364_080--Hb_000523_090 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_134364_010 Hb_134364_010 Hb_000364_080--Hb_134364_010 Hb_002067_020 Hb_002067_020 Hb_000364_080--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002942_160--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002942_160--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_002942_160--Hb_000789_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120 Hb_000523_090--Hb_002067_020 Hb_002174_060 Hb_002174_060 Hb_000523_090--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_000523_090--Hb_010423_020 Hb_000364_060 Hb_000364_060 Hb_000523_090--Hb_000364_060 Hb_004195_280 Hb_004195_280 Hb_000523_090--Hb_004195_280 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_026099_010 Hb_026099_010 Hb_002044_060--Hb_026099_010 Hb_002044_060--Hb_000789_080 Hb_008253_010 Hb_008253_010 Hb_134364_010--Hb_008253_010 Hb_001863_260 Hb_001863_260 Hb_134364_010--Hb_001863_260 Hb_009265_080 Hb_009265_080 Hb_134364_010--Hb_009265_080 Hb_134364_010--Hb_010423_020 Hb_134364_010--Hb_002942_160 Hb_031862_180 Hb_031862_180 Hb_002067_020--Hb_031862_180 Hb_003363_010 Hb_003363_010 Hb_002067_020--Hb_003363_010 Hb_002067_020--Hb_000364_060 Hb_002067_020--Hb_134364_010 Hb_002784_060 Hb_002784_060 Hb_010642_030--Hb_002784_060 Hb_010642_030--Hb_000523_090 Hb_000627_030 Hb_000627_030 Hb_010642_030--Hb_000627_030 Hb_010642_030--Hb_002067_020 Hb_010642_030--Hb_002942_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8661 8.01232 6.45762 7.10379 11.9303 25.1441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4066 8.34371 4.86449 6.04899 8.23738

CAGE analysis