Hb_000365_020

Information

Type -
Description -
Location Contig365: 9442-16665
Sequence    

Annotation

kegg
ID rcu:RCOM_1057980
description Vacuolar sorting receptor 1 precursor, putative
nr
ID XP_002528694.1
description Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
swissprot
ID P93026
description Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2
trembl
ID B9SRT1
description Vacuolar sorting receptor 1, putative OS=Ricinus communis GN=RCOM_1057980 PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37524: 9436-16573 , PASA_asmbl_37525: 12611-12975
cDNA
(Sanger)
(ID:Location)		 042_J11.ab1: 14266-16241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_020 0.0 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
2 Hb_000898_040 0.0955533728 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_004046_020 0.1074839152 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
4 Hb_002217_300 0.108054312 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
5 Hb_001344_010 0.1112957232 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
6 Hb_000169_090 0.1113450701 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
7 Hb_005548_010 0.1148616259 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
8 Hb_000032_100 0.1149707481 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
9 Hb_003893_010 0.1227234243 - - hypothetical protein M569_16374 [Genlisea aurea]
10 Hb_005490_030 0.1238787805 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
11 Hb_000999_050 0.12728848 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
12 Hb_005054_100 0.1283901482 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
13 Hb_000280_080 0.1284482059 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
14 Hb_000832_020 0.130148467 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
15 Hb_002299_060 0.1315362598 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
16 Hb_002842_020 0.1324133098 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
17 Hb_023001_060 0.133155109 - - PREDICTED: importin-11 [Jatropha curcas]
18 Hb_001500_040 0.1340127135 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_000029_020 0.1341419284 - - Vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_001959_210 0.13426711 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_020 Hb_000365_020 Hb_000898_040 Hb_000898_040 Hb_000365_020--Hb_000898_040 Hb_004046_020 Hb_004046_020 Hb_000365_020--Hb_004046_020 Hb_002217_300 Hb_002217_300 Hb_000365_020--Hb_002217_300 Hb_001344_010 Hb_001344_010 Hb_000365_020--Hb_001344_010 Hb_000169_090 Hb_000169_090 Hb_000365_020--Hb_000169_090 Hb_005548_010 Hb_005548_010 Hb_000365_020--Hb_005548_010 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_004046_020--Hb_000169_090 Hb_004046_020--Hb_000898_040 Hb_000928_020 Hb_000928_020 Hb_004046_020--Hb_000928_020 Hb_005054_100 Hb_005054_100 Hb_004046_020--Hb_005054_100 Hb_007545_030 Hb_007545_030 Hb_004046_020--Hb_007545_030 Hb_002299_060 Hb_002299_060 Hb_004046_020--Hb_002299_060 Hb_000832_020 Hb_000832_020 Hb_002217_300--Hb_000832_020 Hb_089032_040 Hb_089032_040 Hb_002217_300--Hb_089032_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_001344_010--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_001344_010--Hb_023001_060 Hb_001344_010--Hb_005054_100 Hb_001344_010--Hb_000169_090 Hb_000700_110 Hb_000700_110 Hb_001344_010--Hb_000700_110 Hb_003777_310 Hb_003777_310 Hb_001344_010--Hb_003777_310 Hb_000169_090--Hb_005054_100 Hb_003195_070 Hb_003195_070 Hb_000169_090--Hb_003195_070 Hb_000169_090--Hb_000898_040 Hb_003206_070 Hb_003206_070 Hb_000169_090--Hb_003206_070 Hb_000221_270 Hb_000221_270 Hb_005548_010--Hb_000221_270 Hb_005625_020 Hb_005625_020 Hb_005548_010--Hb_005625_020 Hb_000069_460 Hb_000069_460 Hb_005548_010--Hb_000069_460 Hb_003687_240 Hb_003687_240 Hb_005548_010--Hb_003687_240 Hb_001635_060 Hb_001635_060 Hb_005548_010--Hb_001635_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.8861 28.7945 15.2781 59.027 107.012 93.5153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.8869 40.8276 163.694 87.7289 42.323

CAGE analysis