Hb_000365_030

Information

Type -
Description -
Location Contig365: 21015-25278
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10940g
description POPTRDRAFT_762585; hypothetical protein
nr
ID XP_012091043.1
description PREDICTED: transmembrane protein 87B [Jatropha curcas]
swissprot
ID Q96K49
description Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1
trembl
ID A0A067JDF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00649 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 87b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37527: 20994-25282 , PASA_asmbl_37528: 20945-25244 , PASA_asmbl_37531: 26276-26689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_030 0.0 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
2 Hb_000130_020 0.078921053 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
3 Hb_178968_050 0.0790924433 - - PREDICTED: probable serine incorporator [Jatropha curcas]
4 Hb_001733_030 0.0807510244 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
5 Hb_004109_370 0.0837446167 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_000030_060 0.0871155145 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
7 Hb_000635_030 0.088533042 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
8 Hb_003436_020 0.0888245455 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
9 Hb_006618_090 0.0888728494 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
10 Hb_002475_040 0.0903617337 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
11 Hb_000243_130 0.0921396358 - - hypothetical protein M569_10795, partial [Genlisea aurea]
12 Hb_003913_110 0.0923417441 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
13 Hb_002311_290 0.0923699732 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
14 Hb_002686_040 0.0938592644 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
15 Hb_025477_040 0.0940930954 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
16 Hb_002259_080 0.0962668195 - - protein transport protein sec23, putative [Ricinus communis]
17 Hb_000608_230 0.0968012212 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
18 Hb_002391_360 0.0970606301 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
19 Hb_007894_160 0.0971287034 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
20 Hb_006478_060 0.0972385413 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_030 Hb_000365_030 Hb_000130_020 Hb_000130_020 Hb_000365_030--Hb_000130_020 Hb_178968_050 Hb_178968_050 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000635_030 Hb_000635_030 Hb_000365_030--Hb_000635_030 Hb_000130_020--Hb_000635_030 Hb_000130_020--Hb_178968_050 Hb_000120_280 Hb_000120_280 Hb_000130_020--Hb_000120_280 Hb_140049_080 Hb_140049_080 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_141069_010 Hb_141069_010 Hb_000130_020--Hb_141069_010 Hb_000608_230 Hb_000608_230 Hb_178968_050--Hb_000608_230 Hb_178968_050--Hb_140049_080 Hb_002686_040 Hb_002686_040 Hb_178968_050--Hb_002686_040 Hb_178968_050--Hb_004109_370 Hb_133702_030 Hb_133702_030 Hb_001733_030--Hb_133702_030 Hb_001733_030--Hb_004109_370 Hb_004096_190 Hb_004096_190 Hb_001733_030--Hb_004096_190 Hb_001454_370 Hb_001454_370 Hb_001733_030--Hb_001454_370 Hb_006501_010 Hb_006501_010 Hb_001733_030--Hb_006501_010 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_004109_370--Hb_140049_080 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130 Hb_000286_170 Hb_000286_170 Hb_000030_060--Hb_000286_170 Hb_006618_090 Hb_006618_090 Hb_000030_060--Hb_006618_090 Hb_010417_060 Hb_010417_060 Hb_000030_060--Hb_010417_060 Hb_001307_080 Hb_001307_080 Hb_000030_060--Hb_001307_080 Hb_033554_020 Hb_033554_020 Hb_000030_060--Hb_033554_020 Hb_000635_030--Hb_141069_010 Hb_001668_010 Hb_001668_010 Hb_000635_030--Hb_001668_010 Hb_000635_030--Hb_000120_280 Hb_002259_080 Hb_002259_080 Hb_000635_030--Hb_002259_080 Hb_004267_040 Hb_004267_040 Hb_000635_030--Hb_004267_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.0887 36.4502 34.2869 40.8024 59.2393 38.7428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3757 11.5103 16.8628 58.8382 33.0728

CAGE analysis