Hb_000365_060

Information

Type -
Description -
Location Contig365: 30301-48585
Sequence    

Annotation

kegg
ID rcu:RCOM_1323640
description 5'->3' exoribonuclease, putative
nr
ID XP_002519992.1
description 5'->3' exoribonuclease, putative [Ricinus communis]
swissprot
ID Q9FQ04
description 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
trembl
ID B9S1X3
description 5'->3' exoribonuclease, putative OS=Ricinus communis GN=RCOM_1323640 PE=4 SV=1
Gene Ontology
ID GO:0005488
description 5 -3 exoribonuclease 4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37533: 32269-32637 , PASA_asmbl_37534: 32639-38679 , PASA_asmbl_37536: 36967-37153 , PASA_asmbl_37537: 38869-46252 , PASA_asmbl_37538: 46315-47800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_060 0.0 - - 5'->3' exoribonuclease, putative [Ricinus communis]
2 Hb_005843_040 0.0732205817 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
3 Hb_002105_080 0.0902857208 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_007904_180 0.0910885268 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
5 Hb_007348_030 0.0929624821 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
6 Hb_013753_010 0.0969896455 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
7 Hb_003866_020 0.1083513671 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001247_140 0.1088927132 - - -
9 Hb_006816_410 0.1110097937 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
10 Hb_012016_020 0.1121959322 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
11 Hb_009421_030 0.1131201872 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
12 Hb_006501_020 0.1139997254 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
13 Hb_006816_300 0.1150607234 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
14 Hb_004037_030 0.1153901281 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
15 Hb_000227_380 0.1157844113 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
16 Hb_000116_280 0.1159610489 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
17 Hb_005122_060 0.1188318383 - - unnamed protein product [Vitis vinifera]
18 Hb_148209_020 0.1198752695 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
19 Hb_001486_120 0.1213339577 - - PREDICTED: importin-5-like [Jatropha curcas]
20 Hb_000453_080 0.1220528188 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000365_060 Hb_000365_060 Hb_005843_040 Hb_005843_040 Hb_000365_060--Hb_005843_040 Hb_002105_080 Hb_002105_080 Hb_000365_060--Hb_002105_080 Hb_007904_180 Hb_007904_180 Hb_000365_060--Hb_007904_180 Hb_007348_030 Hb_007348_030 Hb_000365_060--Hb_007348_030 Hb_013753_010 Hb_013753_010 Hb_000365_060--Hb_013753_010 Hb_003866_020 Hb_003866_020 Hb_000365_060--Hb_003866_020 Hb_005843_040--Hb_002105_080 Hb_009421_030 Hb_009421_030 Hb_005843_040--Hb_009421_030 Hb_005843_040--Hb_007904_180 Hb_000108_080 Hb_000108_080 Hb_005843_040--Hb_000108_080 Hb_000640_200 Hb_000640_200 Hb_005843_040--Hb_000640_200 Hb_006816_300 Hb_006816_300 Hb_002105_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_002105_080--Hb_007849_020 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_000227_380 Hb_000227_380 Hb_002105_080--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_002105_080--Hb_000250_070 Hb_004037_030 Hb_004037_030 Hb_007904_180--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_007904_180--Hb_000475_020 Hb_000002_440 Hb_000002_440 Hb_007904_180--Hb_000002_440 Hb_001811_120 Hb_001811_120 Hb_007904_180--Hb_001811_120 Hb_000813_100 Hb_000813_100 Hb_007904_180--Hb_000813_100 Hb_007904_180--Hb_006816_300 Hb_000244_240 Hb_000244_240 Hb_007348_030--Hb_000244_240 Hb_101151_020 Hb_101151_020 Hb_007348_030--Hb_101151_020 Hb_000120_510 Hb_000120_510 Hb_007348_030--Hb_000120_510 Hb_001278_060 Hb_001278_060 Hb_007348_030--Hb_001278_060 Hb_001301_210 Hb_001301_210 Hb_007348_030--Hb_001301_210 Hb_000890_220 Hb_000890_220 Hb_013753_010--Hb_000890_220 Hb_004032_350 Hb_004032_350 Hb_013753_010--Hb_004032_350 Hb_012760_200 Hb_012760_200 Hb_013753_010--Hb_012760_200 Hb_013753_010--Hb_101151_020 Hb_000331_480 Hb_000331_480 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_003866_020--Hb_000227_380 Hb_006588_050 Hb_006588_050 Hb_003866_020--Hb_006588_050 Hb_003866_020--Hb_006816_300 Hb_004899_070 Hb_004899_070 Hb_003866_020--Hb_004899_070 Hb_000239_070 Hb_000239_070 Hb_003866_020--Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_003866_020--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.6167 43.3045 4.8353 4.98715 56.1562 83.7045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1949 9.35857 15.0633 18.2698 12.0415

CAGE analysis