Hb_000365_070

Information

Type -
Description -
Location Contig365: 50666-56712
Sequence    

Annotation

kegg
ID rcu:RCOM_1323630
description DNA binding protein, putative
nr
ID XP_012090949.1
description PREDICTED: SWR1 complex subunit 2 [Jatropha curcas]
swissprot
ID F4IP06
description SWR1 complex subunit 2 OS=Arabidopsis thaliana GN=SWC2 PE=1 SV=1
trembl
ID A0A067JQJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00591 PE=4 SV=1
Gene Ontology
ID GO:0005634
description swr1 complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37539: 51715-56615 , PASA_asmbl_37540: 55513-56137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_070 0.0 - - PREDICTED: SWR1 complex subunit 2 [Jatropha curcas]
2 Hb_001450_050 0.1138290072 - - conserved hypothetical protein [Ricinus communis]
3 Hb_024570_010 0.129565545 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_028089_010 0.1334966408 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
5 Hb_000330_100 0.1335942353 - - hypothetical protein VITISV_011650 [Vitis vinifera]
6 Hb_002835_040 0.1337247284 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
7 Hb_007545_030 0.1392855741 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002095_010 0.1398816596 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
9 Hb_002909_050 0.1436735514 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007904_160 0.1437038592 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
11 Hb_000302_180 0.1444678981 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000032_100 0.1448230554 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
13 Hb_000796_220 0.1459679416 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
14 Hb_003728_080 0.1462077784 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
15 Hb_004369_020 0.1466967515 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
16 Hb_000028_610 0.1494123873 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
17 Hb_008165_060 0.1500449829 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
18 Hb_003001_150 0.1508886775 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_006711_100 0.15172899 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
20 Hb_000463_140 0.1519234302 - - Poly(rC)-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000365_070 Hb_000365_070 Hb_001450_050 Hb_001450_050 Hb_000365_070--Hb_001450_050 Hb_024570_010 Hb_024570_010 Hb_000365_070--Hb_024570_010 Hb_028089_010 Hb_028089_010 Hb_000365_070--Hb_028089_010 Hb_000330_100 Hb_000330_100 Hb_000365_070--Hb_000330_100 Hb_002835_040 Hb_002835_040 Hb_000365_070--Hb_002835_040 Hb_007545_030 Hb_007545_030 Hb_000365_070--Hb_007545_030 Hb_004369_020 Hb_004369_020 Hb_001450_050--Hb_004369_020 Hb_003728_080 Hb_003728_080 Hb_001450_050--Hb_003728_080 Hb_010139_040 Hb_010139_040 Hb_001450_050--Hb_010139_040 Hb_001450_050--Hb_002835_040 Hb_001450_050--Hb_000330_100 Hb_148209_100 Hb_148209_100 Hb_001450_050--Hb_148209_100 Hb_000739_310 Hb_000739_310 Hb_024570_010--Hb_000739_310 Hb_024570_010--Hb_007545_030 Hb_024570_010--Hb_028089_010 Hb_001019_190 Hb_001019_190 Hb_024570_010--Hb_001019_190 Hb_002374_240 Hb_002374_240 Hb_024570_010--Hb_002374_240 Hb_000819_080 Hb_000819_080 Hb_024570_010--Hb_000819_080 Hb_002835_370 Hb_002835_370 Hb_028089_010--Hb_002835_370 Hb_009548_020 Hb_009548_020 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_000032_100 Hb_000032_100 Hb_028089_010--Hb_000032_100 Hb_188063_020 Hb_188063_020 Hb_028089_010--Hb_188063_020 Hb_000796_220 Hb_000796_220 Hb_000330_100--Hb_000796_220 Hb_002217_300 Hb_002217_300 Hb_000330_100--Hb_002217_300 Hb_046198_010 Hb_046198_010 Hb_000330_100--Hb_046198_010 Hb_000832_020 Hb_000832_020 Hb_000330_100--Hb_000832_020 Hb_000330_100--Hb_028089_010 Hb_004414_060 Hb_004414_060 Hb_002835_040--Hb_004414_060 Hb_005269_070 Hb_005269_070 Hb_002835_040--Hb_005269_070 Hb_004410_030 Hb_004410_030 Hb_002835_040--Hb_004410_030 Hb_002835_040--Hb_004619_030 Hb_000915_260 Hb_000915_260 Hb_002835_040--Hb_000915_260 Hb_002271_030 Hb_002271_030 Hb_002835_040--Hb_002271_030 Hb_007545_030--Hb_000739_310 Hb_000261_350 Hb_000261_350 Hb_007545_030--Hb_000261_350 Hb_007545_030--Hb_001019_190 Hb_007545_030--Hb_028089_010 Hb_007545_030--Hb_000032_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9101 2.82842 7.83688 3.87049 10.2621 12.9681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69063 4.76022 16.1783 11.5043 9.65345

CAGE analysis