Hb_000365_080

Information

Type -
Description -
Location Contig365: 58407-70631
Sequence    

Annotation

kegg
ID rcu:RCOM_1323580
description hypothetical protein
nr
ID XP_012090950.1
description PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JD85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00593 PE=4 SV=1
Gene Ontology
ID GO:0009536
description replicase polyprotein 1ab

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37542: 58425-69085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_080 0.0 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
2 Hb_005211_190 0.0722874015 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
3 Hb_007304_070 0.0775445109 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
4 Hb_007416_020 0.0797067658 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
5 Hb_007575_070 0.0842187317 - - Histone H3.2 [Glycine soja]
6 Hb_001424_020 0.0843547329 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
7 Hb_002107_120 0.0937919921 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
8 Hb_002431_050 0.0943579428 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
9 Hb_000062_390 0.0966855018 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
10 Hb_003053_030 0.0972276416 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
11 Hb_007944_040 0.0996636403 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
12 Hb_001045_080 0.099886437 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
13 Hb_002687_170 0.101438288 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
14 Hb_000111_340 0.102132969 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
15 Hb_010582_010 0.1029457675 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
16 Hb_000028_400 0.1041134735 - - Protein SSU72, putative [Ricinus communis]
17 Hb_010672_060 0.1052611093 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
18 Hb_000069_140 0.105487171 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
19 Hb_029584_060 0.1059945122 - - Grave disease carrier protein, putative [Ricinus communis]
20 Hb_001633_030 0.106350878 - - -

Gene co-expression network

sample Hb_000365_080 Hb_000365_080 Hb_005211_190 Hb_005211_190 Hb_000365_080--Hb_005211_190 Hb_007304_070 Hb_007304_070 Hb_000365_080--Hb_007304_070 Hb_007416_020 Hb_007416_020 Hb_000365_080--Hb_007416_020 Hb_007575_070 Hb_007575_070 Hb_000365_080--Hb_007575_070 Hb_001424_020 Hb_001424_020 Hb_000365_080--Hb_001424_020 Hb_002107_120 Hb_002107_120 Hb_000365_080--Hb_002107_120 Hb_002609_210 Hb_002609_210 Hb_005211_190--Hb_002609_210 Hb_005211_190--Hb_001424_020 Hb_005211_190--Hb_002107_120 Hb_009421_040 Hb_009421_040 Hb_005211_190--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_005211_190--Hb_000680_140 Hb_000111_340 Hb_000111_340 Hb_007304_070--Hb_000111_340 Hb_003053_030 Hb_003053_030 Hb_007304_070--Hb_003053_030 Hb_000881_080 Hb_000881_080 Hb_007304_070--Hb_000881_080 Hb_001633_030 Hb_001633_030 Hb_007304_070--Hb_001633_030 Hb_002431_050 Hb_002431_050 Hb_007304_070--Hb_002431_050 Hb_007416_020--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_007416_020--Hb_010672_060 Hb_001080_080 Hb_001080_080 Hb_007416_020--Hb_001080_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_029584_060 Hb_029584_060 Hb_007416_020--Hb_029584_060 Hb_001634_040 Hb_001634_040 Hb_007575_070--Hb_001634_040 Hb_000805_130 Hb_000805_130 Hb_007575_070--Hb_000805_130 Hb_007944_040 Hb_007944_040 Hb_007575_070--Hb_007944_040 Hb_002588_010 Hb_002588_010 Hb_007575_070--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_007575_070--Hb_000062_390 Hb_001045_080 Hb_001045_080 Hb_007575_070--Hb_001045_080 Hb_000260_200 Hb_000260_200 Hb_001424_020--Hb_000260_200 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_000069_140 Hb_000069_140 Hb_001424_020--Hb_000069_140 Hb_000083_090 Hb_000083_090 Hb_001424_020--Hb_000083_090 Hb_002107_120--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_002107_120--Hb_148200_010 Hb_000193_200 Hb_000193_200 Hb_002107_120--Hb_000193_200 Hb_003376_130 Hb_003376_130 Hb_002107_120--Hb_003376_130 Hb_001268_140 Hb_001268_140 Hb_002107_120--Hb_001268_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.0497 17.8588 15.6134 29.824 29.3675 40.9014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.875 190.777 67.2255 21.6936 33.5113

CAGE analysis