Hb_000365_090

Information

Type -
Description -
Location Contig365: 74940-80431
Sequence    

Annotation

kegg
ID rcu:RCOM_1323570
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002519985.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9LT96
description Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1
trembl
ID B9S1W6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1323570 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37545: 74859-76470 , PASA_asmbl_37546: 76842-76993 , PASA_asmbl_37547: 77504-78796 , PASA_asmbl_37548: 79001-80019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_090 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_182516_010 0.1375888053 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
3 Hb_026447_030 0.15010668 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
4 Hb_004375_130 0.1695957556 - - kinesin heavy chain, putative [Ricinus communis]
5 Hb_007722_010 0.1774595231 - - PREDICTED: kinesin light chain [Jatropha curcas]
6 Hb_002027_220 0.1845091857 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_001268_210 0.19648948 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001005_090 0.1971192653 - - PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]
9 Hb_004324_240 0.1988793543 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
10 Hb_000016_030 0.1997404706 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
11 Hb_135810_010 0.2021242734 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
12 Hb_004846_200 0.2033700461 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
13 Hb_001002_040 0.2057729394 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
14 Hb_001141_410 0.2065386862 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
15 Hb_003304_050 0.2072304551 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
16 Hb_004724_430 0.2097531871 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
17 Hb_005271_080 0.2109800139 - - receptor kinase, putative [Ricinus communis]
18 Hb_005460_030 0.2130324963 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
19 Hb_003405_050 0.2137904214 - - -
20 Hb_033642_100 0.2138584116 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]

Gene co-expression network

sample Hb_000365_090 Hb_000365_090 Hb_182516_010 Hb_182516_010 Hb_000365_090--Hb_182516_010 Hb_026447_030 Hb_026447_030 Hb_000365_090--Hb_026447_030 Hb_004375_130 Hb_004375_130 Hb_000365_090--Hb_004375_130 Hb_007722_010 Hb_007722_010 Hb_000365_090--Hb_007722_010 Hb_002027_220 Hb_002027_220 Hb_000365_090--Hb_002027_220 Hb_001268_210 Hb_001268_210 Hb_000365_090--Hb_001268_210 Hb_182516_010--Hb_004375_130 Hb_000137_070 Hb_000137_070 Hb_182516_010--Hb_000137_070 Hb_001141_410 Hb_001141_410 Hb_182516_010--Hb_001141_410 Hb_113739_010 Hb_113739_010 Hb_182516_010--Hb_113739_010 Hb_182516_010--Hb_007722_010 Hb_026447_030--Hb_002027_220 Hb_004724_430 Hb_004724_430 Hb_026447_030--Hb_004724_430 Hb_003304_050 Hb_003304_050 Hb_026447_030--Hb_003304_050 Hb_000086_200 Hb_000086_200 Hb_026447_030--Hb_000086_200 Hb_026447_030--Hb_001268_210 Hb_000554_010 Hb_000554_010 Hb_004375_130--Hb_000554_010 Hb_003376_050 Hb_003376_050 Hb_004375_130--Hb_003376_050 Hb_002769_020 Hb_002769_020 Hb_004375_130--Hb_002769_020 Hb_000096_080 Hb_000096_080 Hb_004375_130--Hb_000096_080 Hb_000392_370 Hb_000392_370 Hb_004375_130--Hb_000392_370 Hb_004705_040 Hb_004705_040 Hb_004375_130--Hb_004705_040 Hb_007722_010--Hb_004375_130 Hb_007722_010--Hb_000554_010 Hb_004007_160 Hb_004007_160 Hb_007722_010--Hb_004007_160 Hb_095595_010 Hb_095595_010 Hb_007722_010--Hb_095595_010 Hb_002027_220--Hb_001268_210 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_000120_240 Hb_000120_240 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010 Hb_003654_010 Hb_003654_010 Hb_002027_220--Hb_003654_010 Hb_003216_110 Hb_003216_110 Hb_001268_210--Hb_003216_110 Hb_004143_070 Hb_004143_070 Hb_001268_210--Hb_004143_070 Hb_000165_130 Hb_000165_130 Hb_001268_210--Hb_000165_130 Hb_000197_210 Hb_000197_210 Hb_001268_210--Hb_000197_210 Hb_002475_050 Hb_002475_050 Hb_001268_210--Hb_002475_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9567 2.66032 5.17699 23.476 25.3493 35.087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2465 5.53054 3.4107 0.705938 14.6143

CAGE analysis