Hb_000365_130

Information

Type -
Description -
Location Contig365: 122185-133805
Sequence    

Annotation

kegg
ID rcu:RCOM_1323430
description hypothetical protein
nr
ID XP_012090959.1
description PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JGB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00600 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105649044

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37559: 122180-133709 , PASA_asmbl_37560: 126028-126210
cDNA
(Sanger)
(ID:Location)		 002_L05.ab1: 126259-133654 , 042_A04.ab1: 127028-133654

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_130 0.0 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
2 Hb_005167_010 0.0946346487 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
3 Hb_007975_060 0.0947922882 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
4 Hb_006132_090 0.0957401437 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
5 Hb_003119_060 0.1001211765 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
6 Hb_003935_060 0.1005663853 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
7 Hb_004965_110 0.1006836736 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
8 Hb_000413_240 0.1020729531 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
9 Hb_001250_070 0.1036479388 - - ATP-citrate synthase, putative [Ricinus communis]
10 Hb_002316_140 0.1056925007 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
11 Hb_000003_780 0.1059181185 - - hexokinase [Manihot esculenta]
12 Hb_007101_110 0.1066004392 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
13 Hb_000394_180 0.1080250806 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
14 Hb_000890_130 0.1081145499 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
15 Hb_004754_050 0.1084694565 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
16 Hb_107879_010 0.1094216552 - - phosphoglycerate mutase, putative [Ricinus communis]
17 Hb_001195_060 0.1105468921 - - Protein yrdA, putative [Ricinus communis]
18 Hb_000721_030 0.1112417627 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
19 Hb_003411_090 0.1120599725 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
20 Hb_002687_120 0.1128814078 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000365_130 Hb_000365_130 Hb_005167_010 Hb_005167_010 Hb_000365_130--Hb_005167_010 Hb_007975_060 Hb_007975_060 Hb_000365_130--Hb_007975_060 Hb_006132_090 Hb_006132_090 Hb_000365_130--Hb_006132_090 Hb_003119_060 Hb_003119_060 Hb_000365_130--Hb_003119_060 Hb_003935_060 Hb_003935_060 Hb_000365_130--Hb_003935_060 Hb_004965_110 Hb_004965_110 Hb_000365_130--Hb_004965_110 Hb_001195_060 Hb_001195_060 Hb_005167_010--Hb_001195_060 Hb_012799_170 Hb_012799_170 Hb_005167_010--Hb_012799_170 Hb_005167_010--Hb_006132_090 Hb_000080_130 Hb_000080_130 Hb_005167_010--Hb_000080_130 Hb_004545_110 Hb_004545_110 Hb_005167_010--Hb_004545_110 Hb_005167_010--Hb_007975_060 Hb_004754_050 Hb_004754_050 Hb_007975_060--Hb_004754_050 Hb_000061_180 Hb_000061_180 Hb_007975_060--Hb_000061_180 Hb_002157_120 Hb_002157_120 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_133702_010 Hb_133702_010 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_006132_090--Hb_003119_060 Hb_000890_130 Hb_000890_130 Hb_003119_060--Hb_000890_130 Hb_002687_120 Hb_002687_120 Hb_003119_060--Hb_002687_120 Hb_000028_520 Hb_000028_520 Hb_003119_060--Hb_000028_520 Hb_003119_060--Hb_002157_120 Hb_000774_020 Hb_000774_020 Hb_003119_060--Hb_000774_020 Hb_001504_030 Hb_001504_030 Hb_003935_060--Hb_001504_030 Hb_001250_070 Hb_001250_070 Hb_003935_060--Hb_001250_070 Hb_000721_030 Hb_000721_030 Hb_003935_060--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_003935_060--Hb_001102_020 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_003266_030 Hb_003266_030 Hb_004965_110--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_004965_110--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_004965_110--Hb_011671_260 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_004965_110--Hb_001900_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9702 5.52391 26.4273 22.2122 8.56481 6.47859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7575 17.4794 12.7274 6.20735 18.6375

CAGE analysis