Hb_000365_160

Information

Type -
Description -
Location Contig365: 167259-172206
Sequence    

Annotation

kegg
ID rcu:RCOM_1323300
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_012090964.1
description PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
swissprot
ID Q8GXZ3
description Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1
trembl
ID A0A067JDB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00604 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase at5g01020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37565: 169517-172105 , PASA_asmbl_37566: 169891-170054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_160 0.0 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
2 Hb_004920_060 0.1199365754 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
3 Hb_001910_020 0.1240169637 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
4 Hb_002307_350 0.1257816213 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
5 Hb_008246_030 0.1267082485 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
6 Hb_002411_180 0.1268983953 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
7 Hb_005408_020 0.127963928 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001369_350 0.1303344485 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
9 Hb_073973_160 0.1319284097 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_001731_020 0.13237442 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
11 Hb_004376_030 0.1339207439 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
12 Hb_000025_650 0.1375594774 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
13 Hb_004899_030 0.1375994884 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
14 Hb_002742_080 0.1382871473 - - unknown [Populus trichocarpa]
15 Hb_004218_070 0.1383808931 - - annexin [Manihot esculenta]
16 Hb_035318_010 0.1386656204 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
17 Hb_001882_040 0.1393939087 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
18 Hb_001085_320 0.139466004 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
19 Hb_002301_270 0.140232288 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
20 Hb_002681_170 0.1406561098 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_160 Hb_000365_160 Hb_004920_060 Hb_004920_060 Hb_000365_160--Hb_004920_060 Hb_001910_020 Hb_001910_020 Hb_000365_160--Hb_001910_020 Hb_002307_350 Hb_002307_350 Hb_000365_160--Hb_002307_350 Hb_008246_030 Hb_008246_030 Hb_000365_160--Hb_008246_030 Hb_002411_180 Hb_002411_180 Hb_000365_160--Hb_002411_180 Hb_005408_020 Hb_005408_020 Hb_000365_160--Hb_005408_020 Hb_078477_040 Hb_078477_040 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_002307_350--Hb_005408_020 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_002307_350--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_002307_350--Hb_017895_020 Hb_000914_080 Hb_000914_080 Hb_002307_350--Hb_000914_080 Hb_000021_020 Hb_000021_020 Hb_002307_350--Hb_000021_020 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_008246_030--Hb_017895_020 Hb_009838_130 Hb_009838_130 Hb_002411_180--Hb_009838_130 Hb_001396_290 Hb_001396_290 Hb_002411_180--Hb_001396_290 Hb_008518_050 Hb_008518_050 Hb_002411_180--Hb_008518_050 Hb_009913_050 Hb_009913_050 Hb_002411_180--Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_002411_180--Hb_005214_060 Hb_002048_090 Hb_002048_090 Hb_002411_180--Hb_002048_090 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_005408_020--Hb_000914_080 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.087 21.1499 22.6688 20.4614 45.8403 55.1077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.444 10.2768 1.10485 11.1032 10.4846

CAGE analysis