Hb_000365_180

Information

Type -
Description -
Location Contig365: 181056-182128
Sequence    

Annotation

kegg
ID pxb:103930254
description protein LURP-one-related 8-like
nr
ID XP_009337833.1
description PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
swissprot
ID Q9ZVI6
description Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1
trembl
ID V4SQD2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012703mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37570: 181346-185905 , PASA_asmbl_37571: 181086-182232 , PASA_asmbl_37572: 181388-182232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_180 0.0 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
2 Hb_009476_070 0.0691036828 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
3 Hb_000163_180 0.0778209089 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
4 Hb_001989_070 0.0790595532 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
5 Hb_008749_010 0.0793886534 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
6 Hb_002010_100 0.0988419811 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
7 Hb_033187_020 0.1047508933 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
8 Hb_138086_010 0.1048964783 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
9 Hb_005463_070 0.1105118907 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_142026_010 0.112492605 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
11 Hb_007894_120 0.1152240419 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
12 Hb_000152_170 0.1155990843 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
13 Hb_028928_020 0.1185995516 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
14 Hb_000054_140 0.1221631942 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
15 Hb_000092_030 0.12308136 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
16 Hb_000477_110 0.1244418687 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
17 Hb_000878_090 0.1246136448 - - sucrose-phosphatase family protein [Populus trichocarpa]
18 Hb_030982_050 0.1264491275 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
19 Hb_008806_040 0.1271923831 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
20 Hb_007483_080 0.1283447812 - - hypothetical protein RCOM_0634810 [Ricinus communis]

Gene co-expression network

sample Hb_000365_180 Hb_000365_180 Hb_009476_070 Hb_009476_070 Hb_000365_180--Hb_009476_070 Hb_000163_180 Hb_000163_180 Hb_000365_180--Hb_000163_180 Hb_001989_070 Hb_001989_070 Hb_000365_180--Hb_001989_070 Hb_008749_010 Hb_008749_010 Hb_000365_180--Hb_008749_010 Hb_002010_100 Hb_002010_100 Hb_000365_180--Hb_002010_100 Hb_033187_020 Hb_033187_020 Hb_000365_180--Hb_033187_020 Hb_138086_010 Hb_138086_010 Hb_009476_070--Hb_138086_010 Hb_008806_040 Hb_008806_040 Hb_009476_070--Hb_008806_040 Hb_009476_070--Hb_008749_010 Hb_002774_180 Hb_002774_180 Hb_009476_070--Hb_002774_180 Hb_005463_070 Hb_005463_070 Hb_009476_070--Hb_005463_070 Hb_142026_010 Hb_142026_010 Hb_000163_180--Hb_142026_010 Hb_000163_180--Hb_008749_010 Hb_030982_050 Hb_030982_050 Hb_000163_180--Hb_030982_050 Hb_003092_020 Hb_003092_020 Hb_000163_180--Hb_003092_020 Hb_106089_010 Hb_106089_010 Hb_000163_180--Hb_106089_010 Hb_001989_070--Hb_002010_100 Hb_001989_070--Hb_008749_010 Hb_007483_080 Hb_007483_080 Hb_001989_070--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_001989_070--Hb_002849_180 Hb_001989_070--Hb_033187_020 Hb_003747_250 Hb_003747_250 Hb_008749_010--Hb_003747_250 Hb_000878_090 Hb_000878_090 Hb_008749_010--Hb_000878_090 Hb_004228_070 Hb_004228_070 Hb_008749_010--Hb_004228_070 Hb_002010_100--Hb_007483_080 Hb_002361_010 Hb_002361_010 Hb_002010_100--Hb_002361_010 Hb_005016_080 Hb_005016_080 Hb_002010_100--Hb_005016_080 Hb_002010_100--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002010_100--Hb_000318_050 Hb_028928_020 Hb_028928_020 Hb_033187_020--Hb_028928_020 Hb_000054_140 Hb_000054_140 Hb_033187_020--Hb_000054_140 Hb_002097_130 Hb_002097_130 Hb_033187_020--Hb_002097_130 Hb_006736_040 Hb_006736_040 Hb_033187_020--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_033187_020--Hb_024650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.556481 66.3034 77.9977 65.1545 0.212894 0.318029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156111 0.122779 0 28.5372 32.2679

CAGE analysis