Hb_000365_190

Information

Type -
Description -
Location Contig365: 184634-185959
Sequence    

Annotation

kegg
ID rcu:RCOM_1323280
description GTP binding protein, putative
nr
ID XP_012090968.1
description PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
swissprot
ID A0MFL4
description Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2
trembl
ID A0A067JQK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00606 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37569: 184893-185905 , PASA_asmbl_37570: 181346-185905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_190 0.0 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
2 Hb_113396_010 0.0807127019 - - cytochrome P450, putative [Ricinus communis]
3 Hb_026048_030 0.0985460277 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000742_260 0.1004413502 - - hypothetical protein RCOM_1336320 [Ricinus communis]
5 Hb_001310_080 0.1056210455 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
6 Hb_011101_010 0.1060776774 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
7 Hb_004586_230 0.1079921186 - - conserved hypothetical protein [Ricinus communis]
8 Hb_013691_060 0.1096775587 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
9 Hb_005618_010 0.1128625749 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
10 Hb_001269_530 0.1159608405 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_001518_030 0.1174139951 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_010267_030 0.1184306485 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_004218_290 0.1193717658 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
14 Hb_012395_260 0.1204197425 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
15 Hb_007292_050 0.1221318159 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_000201_070 0.1286912837 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
17 Hb_000172_070 0.1304265652 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_001587_220 0.1308441816 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_024650_010 0.1311172432 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
20 Hb_003435_040 0.1327413192 - - tonoplast intrinsic protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000365_190 Hb_000365_190 Hb_113396_010 Hb_113396_010 Hb_000365_190--Hb_113396_010 Hb_026048_030 Hb_026048_030 Hb_000365_190--Hb_026048_030 Hb_000742_260 Hb_000742_260 Hb_000365_190--Hb_000742_260 Hb_001310_080 Hb_001310_080 Hb_000365_190--Hb_001310_080 Hb_011101_010 Hb_011101_010 Hb_000365_190--Hb_011101_010 Hb_004586_230 Hb_004586_230 Hb_000365_190--Hb_004586_230 Hb_113396_010--Hb_001310_080 Hb_002218_080 Hb_002218_080 Hb_113396_010--Hb_002218_080 Hb_113396_010--Hb_026048_030 Hb_000024_020 Hb_000024_020 Hb_113396_010--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_113396_010--Hb_004112_050 Hb_001518_030 Hb_001518_030 Hb_026048_030--Hb_001518_030 Hb_026048_030--Hb_001310_080 Hb_000028_330 Hb_000028_330 Hb_026048_030--Hb_000028_330 Hb_024650_010 Hb_024650_010 Hb_026048_030--Hb_024650_010 Hb_013691_060 Hb_013691_060 Hb_000742_260--Hb_013691_060 Hb_004143_050 Hb_004143_050 Hb_000742_260--Hb_004143_050 Hb_004218_290 Hb_004218_290 Hb_000742_260--Hb_004218_290 Hb_000742_260--Hb_113396_010 Hb_000742_260--Hb_011101_010 Hb_001310_080--Hb_002218_080 Hb_001310_080--Hb_004112_050 Hb_001310_080--Hb_000024_020 Hb_001310_080--Hb_001518_030 Hb_123078_010 Hb_123078_010 Hb_011101_010--Hb_123078_010 Hb_011101_010--Hb_004218_290 Hb_001587_220 Hb_001587_220 Hb_011101_010--Hb_001587_220 Hb_002267_030 Hb_002267_030 Hb_011101_010--Hb_002267_030 Hb_000252_190 Hb_000252_190 Hb_011101_010--Hb_000252_190 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_000702_040 Hb_000702_040 Hb_004586_230--Hb_000702_040 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29108 52.3906 12.6492 40.8539 0.259136 0.128824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.039127 0 0 3.82005 12.1227

CAGE analysis