Hb_000365_220

Information

Type -
Description -
Location Contig365: 199650-201747
Sequence    

Annotation

kegg
ID rcu:RCOM_1323050
description protein phosphatase-1, putative (EC:3.1.3.16)
nr
ID XP_002519973.1
description protein phosphatase-1, putative [Ricinus communis]
swissprot
ID P48480
description Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia peniculus PE=3 SV=1
trembl
ID B9S1V4
description Serine/threonine-protein phosphatase OS=Ricinus communis GN=RCOM_1323050 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37577: 200672-200786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_220 0.0 - - protein phosphatase-1, putative [Ricinus communis]
2 Hb_008494_090 0.0850926834 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
3 Hb_000522_010 0.0904695033 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
4 Hb_000417_410 0.0915744597 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
5 Hb_002888_040 0.0939060546 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
6 Hb_003517_100 0.1070828905 transcription factor TF Family: GRAS -
7 Hb_004525_020 0.1245674881 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
8 Hb_073973_020 0.1246049362 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
9 Hb_026698_020 0.1247778331 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
10 Hb_025045_010 0.1248823119 - - catalytic, putative [Ricinus communis]
11 Hb_001865_010 0.1274787529 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
12 Hb_001689_030 0.1313416217 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
13 Hb_003007_030 0.1323022763 - - -
14 Hb_001307_200 0.136289047 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
15 Hb_001195_230 0.1377896881 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
16 Hb_002888_060 0.143183948 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
17 Hb_005568_050 0.1455079691 - - ascorbate peroxidase [Hevea brasiliensis]
18 Hb_001476_090 0.1463192376 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
19 Hb_004605_020 0.1469371135 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
20 Hb_013968_010 0.1491566513 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_220 Hb_000365_220 Hb_008494_090 Hb_008494_090 Hb_000365_220--Hb_008494_090 Hb_000522_010 Hb_000522_010 Hb_000365_220--Hb_000522_010 Hb_000417_410 Hb_000417_410 Hb_000365_220--Hb_000417_410 Hb_002888_040 Hb_002888_040 Hb_000365_220--Hb_002888_040 Hb_003517_100 Hb_003517_100 Hb_000365_220--Hb_003517_100 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020 Hb_008494_090--Hb_000522_010 Hb_025045_010 Hb_025045_010 Hb_008494_090--Hb_025045_010 Hb_003680_010 Hb_003680_010 Hb_008494_090--Hb_003680_010 Hb_067664_010 Hb_067664_010 Hb_008494_090--Hb_067664_010 Hb_008494_090--Hb_002888_040 Hb_000522_010--Hb_003517_100 Hb_000522_010--Hb_000417_410 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020 Hb_026698_020 Hb_026698_020 Hb_000417_410--Hb_026698_020 Hb_073973_020 Hb_073973_020 Hb_000417_410--Hb_073973_020 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_001268_300 Hb_001268_300 Hb_002888_040--Hb_001268_300 Hb_003517_100--Hb_001268_300 Hb_003517_100--Hb_000417_410 Hb_003517_100--Hb_008494_090 Hb_000116_330 Hb_000116_330 Hb_004525_020--Hb_000116_330 Hb_000027_100 Hb_000027_100 Hb_004525_020--Hb_000027_100 Hb_003683_200 Hb_003683_200 Hb_004525_020--Hb_003683_200 Hb_001160_020 Hb_001160_020 Hb_004525_020--Hb_001160_020 Hb_000417_250 Hb_000417_250 Hb_004525_020--Hb_000417_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.192885 2.9137 2.4758 1.51643 0.0648145 0.188465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225024 0.147513 0.165183 2.29009 4.10533

CAGE analysis