Hb_000365_290

Information

Type -
Description -
Location Contig365: 262852-265320
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14860g
description POPTRDRAFT_577232; hypothetical protein
nr
ID XP_012090980.1
description PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00616 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_290 0.0 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
2 Hb_002762_070 0.0620996283 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
3 Hb_006395_010 0.0984642777 - - hypothetical protein RCOM_0725500 [Ricinus communis]
4 Hb_001283_010 0.111554135 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
5 Hb_027445_080 0.1164106248 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
6 Hb_028207_030 0.1170858076 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
7 Hb_000077_460 0.1177930103 - - -
8 Hb_031954_010 0.1227339633 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_017661_020 0.1233935018 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
10 Hb_004837_170 0.1243604698 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
11 Hb_012395_150 0.1268380595 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
12 Hb_004341_010 0.1277933223 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
13 Hb_183820_010 0.1328457601 - - Disease resistance protein RFL1, putative [Ricinus communis]
14 Hb_004635_040 0.1374574043 - - Polyprotein, putative [Solanum demissum]
15 Hb_013914_020 0.1381873467 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_001227_020 0.1405776314 - - -
17 Hb_000586_100 0.1411057201 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002282_030 0.1436950806 - - -
19 Hb_003556_060 0.1446853825 - - -
20 Hb_136884_010 0.1452978365 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000365_290 Hb_000365_290 Hb_002762_070 Hb_002762_070 Hb_000365_290--Hb_002762_070 Hb_006395_010 Hb_006395_010 Hb_000365_290--Hb_006395_010 Hb_001283_010 Hb_001283_010 Hb_000365_290--Hb_001283_010 Hb_027445_080 Hb_027445_080 Hb_000365_290--Hb_027445_080 Hb_028207_030 Hb_028207_030 Hb_000365_290--Hb_028207_030 Hb_000077_460 Hb_000077_460 Hb_000365_290--Hb_000077_460 Hb_002762_070--Hb_027445_080 Hb_017661_020 Hb_017661_020 Hb_002762_070--Hb_017661_020 Hb_004837_170 Hb_004837_170 Hb_002762_070--Hb_004837_170 Hb_002762_070--Hb_028207_030 Hb_031862_090 Hb_031862_090 Hb_002762_070--Hb_031862_090 Hb_012395_150 Hb_012395_150 Hb_006395_010--Hb_012395_150 Hb_001998_260 Hb_001998_260 Hb_006395_010--Hb_001998_260 Hb_005144_100 Hb_005144_100 Hb_006395_010--Hb_005144_100 Hb_004635_040 Hb_004635_040 Hb_006395_010--Hb_004635_040 Hb_006395_010--Hb_002762_070 Hb_001283_010--Hb_000077_460 Hb_004136_050 Hb_004136_050 Hb_001283_010--Hb_004136_050 Hb_031954_010 Hb_031954_010 Hb_001283_010--Hb_031954_010 Hb_017866_020 Hb_017866_020 Hb_001283_010--Hb_017866_020 Hb_002003_020 Hb_002003_020 Hb_001283_010--Hb_002003_020 Hb_004341_010 Hb_004341_010 Hb_001283_010--Hb_004341_010 Hb_027445_080--Hb_017661_020 Hb_005203_010 Hb_005203_010 Hb_027445_080--Hb_005203_010 Hb_027445_080--Hb_031862_090 Hb_027445_080--Hb_004837_170 Hb_002282_030 Hb_002282_030 Hb_027445_080--Hb_002282_030 Hb_028207_030--Hb_000077_460 Hb_028207_030--Hb_031954_010 Hb_028207_030--Hb_004341_010 Hb_028207_030--Hb_031862_090 Hb_028207_030--Hb_027445_080 Hb_000077_460--Hb_017866_020 Hb_000045_180 Hb_000045_180 Hb_000077_460--Hb_000045_180 Hb_013914_020 Hb_013914_020 Hb_000077_460--Hb_013914_020 Hb_000077_460--Hb_002003_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0173859 1.37889 0.134105 1.17419 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.42565 0

CAGE analysis