Hb_000365_350

Information

Type -
Description -
Location Contig365: 323810-327869
Sequence    

Annotation

kegg
ID rcu:RCOM_0126440
description hypothetical protein
nr
ID XP_012090994.1
description PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37605: 324229-327715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_350 0.0 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
2 Hb_012807_120 0.0761142493 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_000050_120 0.079534202 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
4 Hb_000088_180 0.0824308281 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
5 Hb_004032_460 0.0867443992 - - -
6 Hb_098315_100 0.0942354149 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
7 Hb_006478_070 0.0961925292 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
8 Hb_001140_080 0.0980424389 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
9 Hb_001825_010 0.0988354833 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
10 Hb_000320_440 0.1026344487 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
11 Hb_000173_370 0.1027004937 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
12 Hb_000172_530 0.1046738118 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
13 Hb_000300_540 0.1049612237 - - PREDICTED: syntaxin-132 [Jatropha curcas]
14 Hb_001776_080 0.1063548192 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
15 Hb_003506_040 0.1068377147 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
16 Hb_000483_370 0.1096516445 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002025_140 0.1102280003 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
18 Hb_001034_020 0.1123005476 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
19 Hb_060437_010 0.1123065001 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
20 Hb_001846_080 0.1138311523 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000365_350 Hb_000365_350 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_000088_180 Hb_000088_180 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_012807_120--Hb_006478_070 Hb_001140_080 Hb_001140_080 Hb_012807_120--Hb_001140_080 Hb_000320_440 Hb_000320_440 Hb_012807_120--Hb_000320_440 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_002078_040 Hb_002078_040 Hb_000050_120--Hb_002078_040 Hb_003304_080 Hb_003304_080 Hb_000050_120--Hb_003304_080 Hb_002172_030 Hb_002172_030 Hb_000050_120--Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_000050_120--Hb_012654_020 Hb_007810_040 Hb_007810_040 Hb_000050_120--Hb_007810_040 Hb_000088_180--Hb_000320_440 Hb_000088_180--Hb_004032_460 Hb_000260_700 Hb_000260_700 Hb_000088_180--Hb_000260_700 Hb_001776_080 Hb_001776_080 Hb_000088_180--Hb_001776_080 Hb_000173_370 Hb_000173_370 Hb_000088_180--Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_000856_100 Hb_000856_100 Hb_098315_100--Hb_000856_100 Hb_019654_070 Hb_019654_070 Hb_098315_100--Hb_019654_070 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_009193_130 Hb_009193_130 Hb_098315_100--Hb_009193_130 Hb_000155_080 Hb_000155_080 Hb_098315_100--Hb_000155_080 Hb_003506_040 Hb_003506_040 Hb_006478_070--Hb_003506_040 Hb_006478_070--Hb_001140_080 Hb_006478_070--Hb_000320_440 Hb_000172_530 Hb_000172_530 Hb_006478_070--Hb_000172_530 Hb_001846_080 Hb_001846_080 Hb_006478_070--Hb_001846_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.6276 10.9169 3.42598 6.39693 74.5745 73.3568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.756 12.4858 23.8581 5.18422 2.52805

CAGE analysis