Hb_000365_360

Information

Type -
Description -
Location Contig365: 328405-339602
Sequence    

Annotation

kegg
ID cit:102618818
description RING finger and transmembrane domain-containing protein 2-like
nr
ID XP_012090995.1
description PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q96EX2
description RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2
trembl
ID A0A067JDD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00624 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring finger and transmembrane domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37606: 328410-336053 , PASA_asmbl_37607: 333317-336053 , PASA_asmbl_37608: 328754-329030 , PASA_asmbl_37611: 340064-340544
cDNA
(Sanger)
(ID:Location)		 013_H07.ab1: 335280-335957

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_360 0.0 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
2 Hb_098709_010 0.0555489406 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
3 Hb_000317_430 0.0618798767 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
4 Hb_001369_060 0.0665437037 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
5 Hb_002014_080 0.0743958288 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
6 Hb_000035_380 0.0748052926 - - -
7 Hb_118419_020 0.0755425978 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
8 Hb_000175_070 0.0758571047 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
9 Hb_033491_010 0.0769338024 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
10 Hb_000599_120 0.078316719 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
11 Hb_001214_130 0.0812527719 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
12 Hb_001135_160 0.0815924919 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
13 Hb_000442_160 0.0818650448 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
14 Hb_002215_050 0.082142045 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
15 Hb_003125_040 0.0856533215 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
16 Hb_000700_090 0.0873457634 - - protein with unknown function [Ricinus communis]
17 Hb_002207_100 0.0876528826 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
18 Hb_001221_230 0.0877218588 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002686_270 0.0884410673 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003638_140 0.0885354172 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000365_360 Hb_000365_360 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_001437_040 Hb_001437_040 Hb_098709_010--Hb_001437_040 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090 Hb_000317_430--Hb_000035_380 Hb_000175_070 Hb_000175_070 Hb_000317_430--Hb_000175_070 Hb_000317_430--Hb_118419_020 Hb_060809_010 Hb_060809_010 Hb_000317_430--Hb_060809_010 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100 Hb_002215_050 Hb_002215_050 Hb_001369_060--Hb_002215_050 Hb_001369_060--Hb_033491_010 Hb_001804_060 Hb_001804_060 Hb_001369_060--Hb_001804_060 Hb_003638_140 Hb_003638_140 Hb_001369_060--Hb_003638_140 Hb_024714_030 Hb_024714_030 Hb_002014_080--Hb_024714_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_014568_030 Hb_014568_030 Hb_002014_080--Hb_014568_030 Hb_000671_100 Hb_000671_100 Hb_002014_080--Hb_000671_100 Hb_002014_080--Hb_002215_050 Hb_000035_380--Hb_060809_010 Hb_001221_230 Hb_001221_230 Hb_000035_380--Hb_001221_230 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130 Hb_010436_070 Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_118419_020--Hb_000175_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_118419_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.5016 16.5802 11.6076 19.4637 103.867 141.283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.0331 80.6189 74.1763 26.9315 14.3722

CAGE analysis