Hb_000365_380

Information

Type -
Description -
Location Contig365: 347509-348029
Sequence    

Annotation

kegg
ID rcu:RCOM_0126310
description hypothetical protein
nr
ID XP_002531809.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C9Z5
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thaliana GN=At3g08610 PE=3 SV=1
trembl
ID B9T0P0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126310 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37613: 347473-348090 , PASA_asmbl_37614: 346725-347727 , PASA_asmbl_37615: 343973-348090
cDNA
(Sanger)
(ID:Location)		 026_K22.ab1: 347473-348081 , 045_O14.ab1: 347531-348078

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004117_290 0.05704291 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001584_070 0.0578002041 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000317_340 0.062672146 - - conserved hypothetical protein [Ricinus communis]
5 Hb_143629_230 0.0787512084 - - ring finger, putative [Ricinus communis]
6 Hb_025193_050 0.0789275154 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
7 Hb_032202_090 0.0799462991 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
8 Hb_000465_060 0.0817090044 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
9 Hb_012515_010 0.081868361 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
10 Hb_171900_050 0.0831880541 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000417_110 0.084838105 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
12 Hb_001279_070 0.0854611136 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
13 Hb_005686_110 0.0860321059 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
14 Hb_009711_030 0.0861537314 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
15 Hb_070986_010 0.0870024605 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
16 Hb_004595_020 0.0880481014 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
17 Hb_000371_080 0.088430903 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
18 Hb_001824_070 0.0890609565 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
19 Hb_000545_150 0.0892245995 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
20 Hb_001019_090 0.0896708437 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_380 Hb_000365_380 Hb_004117_290 Hb_004117_290 Hb_000365_380--Hb_004117_290 Hb_001584_070 Hb_001584_070 Hb_000365_380--Hb_001584_070 Hb_000317_340 Hb_000317_340 Hb_000365_380--Hb_000317_340 Hb_143629_230 Hb_143629_230 Hb_000365_380--Hb_143629_230 Hb_025193_050 Hb_025193_050 Hb_000365_380--Hb_025193_050 Hb_032202_090 Hb_032202_090 Hb_000365_380--Hb_032202_090 Hb_004117_290--Hb_025193_050 Hb_000316_110 Hb_000316_110 Hb_004117_290--Hb_000316_110 Hb_000928_240 Hb_000928_240 Hb_004117_290--Hb_000928_240 Hb_004595_020 Hb_004595_020 Hb_004117_290--Hb_004595_020 Hb_004117_290--Hb_001584_070 Hb_000465_060 Hb_000465_060 Hb_001584_070--Hb_000465_060 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_000317_340--Hb_032202_090 Hb_000317_340--Hb_143629_230 Hb_000545_150 Hb_000545_150 Hb_000317_340--Hb_000545_150 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_143629_230--Hb_000465_060 Hb_143629_230--Hb_000545_150 Hb_011781_030 Hb_011781_030 Hb_143629_230--Hb_011781_030 Hb_143629_230--Hb_004595_020 Hb_025193_050--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_025193_050--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_004595_020 Hb_000152_430 Hb_000152_430 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_032202_090--Hb_000545_150 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.834 45.854 40.2732 75.5578 175.363 247.456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
320.997 358.569 127.145 57.3582 51.936

CAGE analysis