Hb_000365_390

Information

Type -
Description -
Location Contig365: 362618-377525
Sequence    

Annotation

kegg
ID tcc:TCM_019653
description RNA-binding KH domain-containing protein
nr
ID XP_012091006.1
description PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
swissprot
ID Q9ZVI3
description KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1
trembl
ID A0A067JPA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00627 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at2g38610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37616: 362627-372578 , PASA_asmbl_37617: 376148-377877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_390 0.0 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
2 Hb_010457_030 0.0567844153 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
3 Hb_000010_330 0.0643104532 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
4 Hb_000125_130 0.0665279975 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
5 Hb_007904_200 0.0694045786 - - protein binding protein, putative [Ricinus communis]
6 Hb_001638_170 0.0704833898 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
7 Hb_148644_010 0.0711062934 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_002835_080 0.0711561036 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
9 Hb_019280_040 0.0758565287 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000347_180 0.0758646626 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
11 Hb_002716_130 0.0769240843 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
12 Hb_000072_220 0.0771981055 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
13 Hb_004032_150 0.077253631 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
14 Hb_008643_210 0.077843168 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
15 Hb_000035_320 0.0787046301 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
16 Hb_009548_020 0.0789093864 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_001301_200 0.0803361656 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
18 Hb_001097_050 0.0805265089 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_016172_020 0.0808730299 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
20 Hb_001248_060 0.0810276664 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000365_390 Hb_000365_390 Hb_010457_030 Hb_010457_030 Hb_000365_390--Hb_010457_030 Hb_000010_330 Hb_000010_330 Hb_000365_390--Hb_000010_330 Hb_000125_130 Hb_000125_130 Hb_000365_390--Hb_000125_130 Hb_007904_200 Hb_007904_200 Hb_000365_390--Hb_007904_200 Hb_001638_170 Hb_001638_170 Hb_000365_390--Hb_001638_170 Hb_148644_010 Hb_148644_010 Hb_000365_390--Hb_148644_010 Hb_010457_030--Hb_000010_330 Hb_048937_040 Hb_048937_040 Hb_010457_030--Hb_048937_040 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_010457_030--Hb_007904_200 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010 Hb_000010_330--Hb_007904_200 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_000010_330--Hb_048937_040 Hb_000125_130--Hb_007904_200 Hb_008643_040 Hb_008643_040 Hb_000125_130--Hb_008643_040 Hb_010712_030 Hb_010712_030 Hb_000125_130--Hb_010712_030 Hb_000125_130--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_000125_130--Hb_002835_080 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_004032_150 Hb_004032_150 Hb_001638_170--Hb_004032_150 Hb_005291_030 Hb_005291_030 Hb_001638_170--Hb_005291_030 Hb_001489_150 Hb_001489_150 Hb_001638_170--Hb_001489_150 Hb_000085_160 Hb_000085_160 Hb_001638_170--Hb_000085_160 Hb_110291_010 Hb_110291_010 Hb_001638_170--Hb_110291_010 Hb_001638_170--Hb_002835_080 Hb_148644_010--Hb_002835_080 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_148644_010--Hb_004032_150 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_148644_010--Hb_003195_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.415 20.7246 13.1137 27.3015 23.291 44.7865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4188 25.6773 31.7607 17.9502 17.5751

CAGE analysis