Hb_000365_400

Information

Type -
Description -
Location Contig365: 378110-383667
Sequence    

Annotation

kegg
ID rcu:RCOM_0126280
description metal ion transporter, putative
nr
ID XP_002531807.1
description metal ion transporter, putative [Ricinus communis]
swissprot
ID Q9C9Z1
description Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650 PE=2 SV=2
trembl
ID B9T0N8
description Metal ion transporter, putative OS=Ricinus communis GN=RCOM_0126280 PE=4 SV=1
Gene Ontology
ID GO:0016020
description zinc transporter at3g08650

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37618: 378320-383738 , PASA_asmbl_37619: 378320-383599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_400 0.0 - - metal ion transporter, putative [Ricinus communis]
2 Hb_003086_170 0.0505314982 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
3 Hb_001269_600 0.0798955244 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_002902_130 0.0813178291 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_009569_040 0.0897558637 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
6 Hb_000684_210 0.0901060831 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
7 Hb_027380_220 0.094250946 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
8 Hb_004668_090 0.0948937632 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
9 Hb_170138_010 0.0954276811 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003097_140 0.0959034226 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
11 Hb_001703_050 0.0962823492 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
12 Hb_003206_110 0.0976714989 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
13 Hb_001347_060 0.0984827966 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_003529_030 0.098649869 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
15 Hb_001369_360 0.0988168194 - - embryo yellow protein, partial [Manihot esculenta]
16 Hb_000120_370 0.1000825405 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
17 Hb_010515_020 0.1004024299 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
18 Hb_012518_070 0.1005390691 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_005976_080 0.1020271661 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
20 Hb_005725_130 0.1025139872 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_400 Hb_000365_400 Hb_003086_170 Hb_003086_170 Hb_000365_400--Hb_003086_170 Hb_001269_600 Hb_001269_600 Hb_000365_400--Hb_001269_600 Hb_002902_130 Hb_002902_130 Hb_000365_400--Hb_002902_130 Hb_009569_040 Hb_009569_040 Hb_000365_400--Hb_009569_040 Hb_000684_210 Hb_000684_210 Hb_000365_400--Hb_000684_210 Hb_027380_220 Hb_027380_220 Hb_000365_400--Hb_027380_220 Hb_012518_070 Hb_012518_070 Hb_003086_170--Hb_012518_070 Hb_010515_020 Hb_010515_020 Hb_003086_170--Hb_010515_020 Hb_004994_020 Hb_004994_020 Hb_003086_170--Hb_004994_020 Hb_003086_170--Hb_001269_600 Hb_000363_040 Hb_000363_040 Hb_003086_170--Hb_000363_040 Hb_001703_050 Hb_001703_050 Hb_001269_600--Hb_001703_050 Hb_003159_050 Hb_003159_050 Hb_001269_600--Hb_003159_050 Hb_000409_050 Hb_000409_050 Hb_001269_600--Hb_000409_050 Hb_001828_180 Hb_001828_180 Hb_001269_600--Hb_001828_180 Hb_004096_110 Hb_004096_110 Hb_001269_600--Hb_004096_110 Hb_000363_190 Hb_000363_190 Hb_001269_600--Hb_000363_190 Hb_003988_050 Hb_003988_050 Hb_002902_130--Hb_003988_050 Hb_003097_140 Hb_003097_140 Hb_002902_130--Hb_003097_140 Hb_000390_050 Hb_000390_050 Hb_002902_130--Hb_000390_050 Hb_002902_130--Hb_001703_050 Hb_000389_030 Hb_000389_030 Hb_002902_130--Hb_000389_030 Hb_001662_100 Hb_001662_100 Hb_009569_040--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_009569_040--Hb_000256_150 Hb_005725_130 Hb_005725_130 Hb_009569_040--Hb_005725_130 Hb_000049_020 Hb_000049_020 Hb_009569_040--Hb_000049_020 Hb_007481_010 Hb_007481_010 Hb_009569_040--Hb_007481_010 Hb_002414_050 Hb_002414_050 Hb_009569_040--Hb_002414_050 Hb_000645_280 Hb_000645_280 Hb_000684_210--Hb_000645_280 Hb_000359_210 Hb_000359_210 Hb_000684_210--Hb_000359_210 Hb_170138_010 Hb_170138_010 Hb_000684_210--Hb_170138_010 Hb_000684_210--Hb_001662_100 Hb_003106_190 Hb_003106_190 Hb_000684_210--Hb_003106_190 Hb_000684_210--Hb_009569_040 Hb_000260_010 Hb_000260_010 Hb_027380_220--Hb_000260_010 Hb_001936_130 Hb_001936_130 Hb_027380_220--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001004_070 Hb_001004_070 Hb_027380_220--Hb_001004_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46208 3.29146 4.16386 10.1775 6.38878 4.22767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90258 5.44312 5.07279 7.6485 8.28269

CAGE analysis