Hb_000365_430

Information

Type -
Description -
Location Contig365: 420802-423540
Sequence    

Annotation

kegg
ID rcu:RCOM_0126250
description Root phototropism protein, putative
nr
ID XP_012091015.1
description PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
swissprot
ID Q9C9Z7
description BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2
trembl
ID A0A067JPB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00632 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37620: 421641-423548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_430 0.0 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
2 Hb_003092_020 0.0795081374 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
3 Hb_009189_100 0.0811872236 - - PREDICTED: patellin-6 [Jatropha curcas]
4 Hb_001936_180 0.0815587038 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
5 Hb_007290_050 0.0826247331 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
6 Hb_000098_260 0.0870479894 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_000329_720 0.0932273082 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
8 Hb_000010_440 0.0932286895 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
9 Hb_026240_020 0.1006214724 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
10 Hb_000645_160 0.1010310376 - - protein translocase, putative [Ricinus communis]
11 Hb_001366_290 0.101244556 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
12 Hb_003747_250 0.1051315928 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
13 Hb_000024_150 0.1102146244 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
14 Hb_001638_150 0.1105912482 - - acyltransferase, putative [Ricinus communis]
15 Hb_000742_130 0.1110277323 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
16 Hb_002641_140 0.1110907632 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_022092_110 0.1125031642 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
18 Hb_001440_010 0.1126875518 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
19 Hb_001946_200 0.1141042574 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
20 Hb_002490_060 0.1155932843 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_430 Hb_000365_430 Hb_003092_020 Hb_003092_020 Hb_000365_430--Hb_003092_020 Hb_009189_100 Hb_009189_100 Hb_000365_430--Hb_009189_100 Hb_001936_180 Hb_001936_180 Hb_000365_430--Hb_001936_180 Hb_007290_050 Hb_007290_050 Hb_000365_430--Hb_007290_050 Hb_000098_260 Hb_000098_260 Hb_000365_430--Hb_000098_260 Hb_000329_720 Hb_000329_720 Hb_000365_430--Hb_000329_720 Hb_026240_020 Hb_026240_020 Hb_003092_020--Hb_026240_020 Hb_004117_280 Hb_004117_280 Hb_003092_020--Hb_004117_280 Hb_142026_010 Hb_142026_010 Hb_003092_020--Hb_142026_010 Hb_003092_020--Hb_000098_260 Hb_003454_050 Hb_003454_050 Hb_003092_020--Hb_003454_050 Hb_002171_020 Hb_002171_020 Hb_009189_100--Hb_002171_020 Hb_009189_100--Hb_000329_720 Hb_009189_100--Hb_007290_050 Hb_015934_080 Hb_015934_080 Hb_009189_100--Hb_015934_080 Hb_000310_110 Hb_000310_110 Hb_009189_100--Hb_000310_110 Hb_022092_110 Hb_022092_110 Hb_001936_180--Hb_022092_110 Hb_001440_010 Hb_001440_010 Hb_001936_180--Hb_001440_010 Hb_001946_200 Hb_001946_200 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170 Hb_001366_290 Hb_001366_290 Hb_007290_050--Hb_001366_290 Hb_007290_050--Hb_015934_080 Hb_007290_050--Hb_000310_110 Hb_007290_050--Hb_001936_180 Hb_092975_010 Hb_092975_010 Hb_000098_260--Hb_092975_010 Hb_002641_140 Hb_002641_140 Hb_000098_260--Hb_002641_140 Hb_000411_020 Hb_000411_020 Hb_000098_260--Hb_000411_020 Hb_000742_130 Hb_000742_130 Hb_000098_260--Hb_000742_130 Hb_000098_260--Hb_000645_160 Hb_000329_720--Hb_002171_020 Hb_000005_360 Hb_000005_360 Hb_000329_720--Hb_000005_360 Hb_000329_720--Hb_092975_010 Hb_000329_720--Hb_000742_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0771859 3.76322 10.729 12.5487 0.0298033 0.0291194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0471504 0 0 3.97922 4.38538

CAGE analysis